Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iAJ	35304	2024-11-20	2023-02-08	3.1	3.21	3.09	3.2	0.006	0.86	0.0	0.05	13.91	0.01	2.176	7.45	0.61	7.4	92.5	0.1	-0.31	0.74	0.87	3.03	3.2	0.004	0.60	0.0	0.04	15.41	0.00	2.487	3.62	1.57	5.2	94.8	0.0	0.70	1.13	0.72	0.88	2.61	20768	2602	10	0	4	0	0	logfile
✔	8G3R	29709	2024-11-18	2023-02-08	2.3	3.00	2.32	2.8	0.014	1.67	4.0	0.09	14.04	0.01	2.187	0.45	0.06	3.4	96.4	0.2	-0.80	0.84	0.92	6.44	2.8	0.003	0.63	0.0	0.05	13.67	0.00	2.266	3.65	0.78	2.7	97.1	0.2	-0.04	0.44	0.75	0.88	5.43	14899	1790	38	0	86	0	0	logfile
✔	8G3N	29705	2024-11-20	2023-02-08	2.9	3.49	2.87	3.2	0.016	1.76	0.0	0.09	14.52	0.01	2.302	0.08	0.00	4.9	94.9	0.2	-0.63	0.88	0.91	4.67	3.2	0.003	0.72	0.0	0.04	14.21	0.00	2.328	3.64	2.29	3.5	96.3	0.2	-0.31	0.56	0.85	0.88	3.58	20321	2512	39	0	81	0	0	logfile
✔	8G40	29712	2024-11-19	2023-02-08	2.8	3.23	2.72	3.1	0.015	1.66	2.0	0.09	17.44	0.01	2.196	0.58	0.42	4.4	95.3	0.3	-0.75	0.82	0.92	5.82	3.1	0.008	0.88	2.0	0.05	14.27	0.01	2.195	5.75	1.76	3.7	96.0	0.2	-0.36	0.45	0.78	0.90	4.11	18650	2263	38	0	97	0	0	logfile
✔	8G3Z	29711	2024-11-19	2023-02-08	2.3	3.09	2.40	2.9	0.013	1.66	4.0	0.09	14.36	0.01	2.386	0.97	2.16	4.7	95.1	0.2	-2.34	0.86	0.92	4.85	2.8	0.004	0.67	0.0	0.05	16.09	0.00	2.236	7.17	1.97	2.7	97.1	0.2	-0.78	2.66	0.81	0.91	4.61	19485	2512	16	0	13	0	0	logfile
✔	8G46	29714	2024-11-15	2023-02-08	2.2	2.34	2.28	2.4	0.008	0.88	0.0	0.06	15.57	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.002	0.54	0.0	0.04	16.06	0.00	2.559	5.07	1.27	2.9	97.1	0.0	0.41	0.26	0.62	0.82	3.73	8603	1064	7	0	2	110	0	logfile
✔	8G3L	29701	2024-11-17	2023-02-08	3.5	3.60	3.55	3.6	0.006	0.81	0.0	0.05	16.63	0.01	2.191	7.84	0.00	5.5	94.5	0.0	-0.13	0.66	0.73	2.04	3.6	0.003	0.62	0.0	0.04	17.45	0.00	2.429	5.96	1.41	4.4	95.5	0.1	0.41	0.38	0.66	0.73	1.52	14442	1791	7	0	4	0	0	logfile
✔	8G3Q	29708	2024-11-19	2023-02-08	2.3	3.07	2.34	2.8	0.014	1.71	3.0	0.09	18.86	0.01	2.222	0.91	0.21	3.2	96.4	0.4	-0.93	0.86	0.94	6.55	2.9	0.004	0.66	0.0	0.04	13.77	0.00	2.248	6.58	0.72	2.8	97.1	0.2	-0.06	0.94	0.78	0.90	5.45	18618	2266	38	0	96	0	0	logfile
✔	8G3P	29707	2024-11-20	2023-02-08	2.5	3.17	2.55	2.9	0.015	1.64	8.0	0.09	13.93	0.01	2.314	0.38	0.00	3.9	95.7	0.5	-0.75	0.87	0.94	5.97	2.9	0.007	0.75	0.0	0.05	14.22	0.00	2.265	3.72	1.36	3.5	96.3	0.2	-0.42	1.53	0.81	0.90	5.35	20321	2512	40	0	81	0	0	logfile
✔	8G3K	29700	2024-11-13	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.004	0.55	0.0	0.04	16.87	0.00	2.619	3.72	1.65	0.7	99.3	0.0	4.33	1.14	0.47	0.84	5.18	2244	285	2	0	0	0	0	logfile
✔	8i9Q	35280	2024-11-14	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.004	0.81	0.0	0.05	14.19	0.00	2.431	13.29	0.00	10.0	90.0	0.0	-1.34	1.36	0.46	0.60	—	5179	675	2	0	0	0	0	logfile
✔	8i9S	35282	2024-11-15	2023-02-07	3.26	3.55	3.33	3.6	0.002	0.56	0.0	0.04	12.77	0.00	2.260	5.60	0.00	4.5	95.5	0.0	0.32	0.68	0.75	2.20	3.6	0.004	0.66	0.0	0.05	15.02	0.00	2.575	4.07	1.64	5.5	94.5	0.0	0.32	1.52	0.71	0.80	2.31	8123	1113	5	0	0	0	0	logfile
✔	8CHF	16660	2024-11-17	2023-02-07	4.25	2.79	4.08	1.9	0.006	0.81	0.0	0.05	14.54	0.00	2.136	23.74	0.00	4.9	95.1	0.0	-0.37	0.69	0.68	—	1.9	0.003	0.75	0.0	0.05	13.70	0.00	2.500	17.94	0.00	4.6	95.4	0.0	-0.66	1.49	0.67	0.69	—	12628	1572	8	0	2	0	0	logfile
✔	8i9L	35275	2024-11-15	2023-02-07	3.18	2.32	2.37	3.2	0.003	0.58	0.0	0.04	12.92	0.00	2.235	8.98	0.96	4.6	95.4	0.0	0.32	0.78	0.75	2.64	3.2	0.004	0.62	0.0	0.04	14.72	0.00	2.563	6.87	1.91	4.7	95.3	0.0	0.11	0.33	0.79	0.79	2.81	8617	1183	6	0	0	0	0	logfile
✔	8iA2	35292	2024-11-15	2023-02-07	3.21	2.39	2.33	3.3	0.005	0.76	0.0	0.04	13.19	0.00	2.166	7.08	0.49	7.1	92.9	0.0	-1.13	0.77	0.74	2.82	3.3	0.003	0.69	0.0	0.04	14.96	0.00	2.524	7.98	4.13	5.4	94.6	0.0	-0.15	0.47	0.76	0.73	1.57	8653	1203	6	0	0	0	0	logfile
✔	8G3G	29695	2024-11-14	2023-02-07	3.5	3.73	2.78	3.7	0.007	1.15	2.0	0.08	19.09	0.01	2.216	12.71	9.45	8.0	92.0	0.0	-2.51	0.76	0.73	1.09	3.6	0.004	0.85	0.0	0.05	18.10	0.00	2.517	14.06	8.90	8.4	91.6	0.0	-2.26	1.16	0.77	0.75	1.27	7020	900	10	0	0	0	0	logfile
✔	8G3F	29694	2024-11-17	2023-02-07	3.7	3.93	3.85	3.9	0.005	0.79	0.0	0.04	16.24	0.00	2.148	8.08	0.90	6.0	94.0	0.0	0.23	0.68	0.71	1.06	3.9	0.003	0.74	0.0	0.04	17.33	0.00	2.378	8.86	2.37	5.6	94.4	0.0	0.51	1.37	0.68	0.74	0.97	14442	1791	7	0	4	0	0	logfile
✔	8G3A	29690	2024-11-17	2023-02-07	3.4	3.69	3.48	3.7	0.005	0.72	0.0	0.04	15.96	0.00	2.088	6.37	0.06	5.8	94.0	0.1	0.42	0.60	0.71	1.20	3.7	0.004	0.57	0.0	0.04	17.04	0.00	2.441	4.70	2.11	6.4	93.5	0.1	0.86	0.37	0.60	0.82	0.76	14442	1791	7	0	4	0	0	logfile
✔	8G3B	29691	2024-11-17	2023-02-07	3.5	3.74	3.54	3.7	0.004	0.66	0.0	0.04	15.66	0.00	2.251	5.75	0.26	5.6	94.4	0.0	0.87	0.63	0.74	1.39	3.7	0.003	0.55	0.0	0.04	17.05	0.00	2.562	4.72	1.66	5.0	94.9	0.1	1.25	0.37	0.62	0.75	0.91	14395	1791	7	0	3	0	0	logfile
✔	8G3H	29699	2024-11-14	2023-02-07	3.6	3.80	3.20	3.8	0.016	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	3.8	0.003	1.09	0.0	0.09	17.86	0.00	2.389	15.07	2.86	3.6	96.4	0.0	-1.36	2.58	0.61	0.54	1.10	6541	841	2	0	2	0	0	logfile

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