Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G3A	29690	2024-11-17	2023-02-07	3.4	3.69	3.48	3.7	0.005	0.72	0.0	0.04	15.96	0.00	2.088	6.37	0.06	5.8	94.0	0.1	0.42	0.60	0.71	1.20	3.7	0.004	0.57	0.0	0.04	17.04	0.00	2.441	4.70	2.11	6.4	93.5	0.1	0.86	0.37	0.60	0.82	0.76	14442	1791	7	0	4	0	0	logfile
✔	8i9F	35269	2024-11-14	2023-02-06	2.9	3.26	2.71	3.2	0.004	0.62	0.0	0.05	16.78	0.00	2.204	4.56	5.51	4.8	95.1	0.1	-2.86	0.73	0.87	2.23	3.2	0.003	0.66	0.0	0.04	16.75	0.00	2.147	4.08	2.83	4.9	95.1	0.0	-0.03	0.40	0.72	0.87	1.89	6415	764	9	0	13	0	0	logfile
✔	8G2V	29682	2024-11-13	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	3.0	0.003	0.72	0.0	0.06	17.31	0.00	2.605	15.43	3.89	3.7	96.3	0.0	-3.19	0.67	0.44	0.83	7.56	1660	210	10	0	0	0	0	logfile
✔	8i9H	35272	2024-11-14	2023-02-06	3.6	3.94	3.50	3.9	0.006	0.71	0.0	0.05	16.88	0.00	2.135	8.35	7.58	9.6	90.4	0.0	-4.33	0.67	0.82	2.13	4.0	0.002	0.69	0.0	0.04	16.77	0.00	2.331	5.20	2.19	4.3	95.7	0.0	-0.81	1.18	0.70	0.83	1.48	6514	780	9	0	13	0	0	logfile
✔	8i95	35257	2024-11-15	2023-02-06	2.88	3.13	2.89	3.2	0.004	0.61	0.0	0.04	14.09	0.00	2.195	7.07	1.15	5.2	94.8	0.0	0.10	0.63	0.79	3.85	3.2	0.003	0.58	0.0	0.04	14.93	0.00	2.566	5.98	2.29	4.8	95.2	0.0	0.21	0.27	0.62	0.79	3.49	8153	1121	7	0	1	0	0	logfile
✔	8G30	29686	2024-11-20	2023-02-06	3.1	4.00	3.09	3.6	0.016	1.87	0.0	0.09	16.96	0.01	2.213	0.83	0.56	6.2	93.5	0.3	-1.88	0.83	0.87	3.70	3.6	0.004	0.76	0.0	0.04	14.03	0.00	2.275	6.82	2.25	3.5	96.3	0.2	-0.30	0.66	0.79	0.82	2.96	20449	2503	40	0	91	0	0	logfile
✔	8i9A	35263	2024-11-15	2023-02-06	3.57	3.85	3.66	3.9	0.004	0.76	0.0	0.05	14.16	0.01	1.959	6.87	1.19	3.5	96.5	0.0	-0.11	0.66	0.76	2.90	3.9	0.005	0.76	0.0	0.05	15.10	0.00	2.474	9.63	3.22	4.7	95.3	0.0	0.63	0.53	0.66	0.77	1.97	8409	1130	7	0	1	0	0	logfile
✔	8G2Y	29684	2024-11-17	2023-02-06	3.44	3.81	3.54	3.8	0.004	0.76	0.0	0.04	15.56	0.00	2.204	4.67	0.00	4.5	95.5	0.0	-1.42	0.58	0.76	2.31	3.9	0.004	0.56	0.0	0.04	15.63	0.00	2.251	8.64	3.82	6.4	93.6	0.0	-1.17	0.36	0.56	0.79	2.32	13019	891	6	0	1	0	6342	logfile
✔	8i9E	35268	2024-11-14	2023-02-06	3.2	3.50	3.01	3.5	0.008	0.74	0.0	0.05	16.27	0.00	2.266	4.96	4.76	9.7	90.3	0.0	-3.37	0.59	0.83	2.70	3.5	0.002	0.58	0.0	0.04	16.36	0.00	2.530	2.88	2.23	4.9	95.1	0.0	-0.22	0.33	0.57	0.82	2.33	6421	764	9	0	13	0	0	logfile
✔	8i97	35259	2024-11-15	2023-02-06	3.19	3.43	3.21	3.5	0.005	0.61	1.0	0.05	12.74	0.00	2.261	7.89	0.13	5.2	94.8	0.0	0.00	0.68	0.78	2.78	3.5	0.004	0.59	0.0	0.04	14.49	0.00	2.529	7.44	1.64	4.6	95.4	0.0	0.06	1.12	0.68	0.79	2.42	8130	1113	5	0	0	0	0	logfile
✔	8i91	35254	2024-11-20	2023-02-06	3.3	3.48	3.29	3.4	0.011	1.03	0.0	0.06	17.23	0.01	1.837	22.83	8.31	12.9	85.0	2.2	-4.52	0.49	0.52	1.37	3.4	0.004	0.72	0.0	0.04	16.94	0.00	1.957	7.59	2.64	6.3	93.6	0.1	-0.41	2.69	0.70	0.78	1.66	21764	2658	24	0	36	0	0	logfile
✔	8i9G	35270	2024-11-14	2023-02-06	3.2	3.67	3.09	3.6	0.005	0.67	0.0	0.05	16.41	0.00	2.213	4.97	4.97	6.6	93.4	0.0	-3.28	0.72	0.83	2.49	3.6	0.003	0.64	0.0	0.04	16.54	0.00	2.450	2.68	3.51	5.5	94.5	0.0	-0.22	0.41	0.71	0.83	2.46	6507	778	9	0	13	0	0	logfile
✔	8CGH	16643	2024-11-14	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	8CGG	16642	2024-11-14	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	8i88	35241	2024-11-14	2023-02-03	3.7	3.96	3.63	3.9	0.003	0.66	0.0	0.04	16.50	0.01	2.077	9.42	0.38	4.0	95.9	0.1	0.14	0.74	0.79	1.45	3.9	0.003	0.64	0.0	0.04	17.25	0.00	2.410	7.84	3.92	4.4	95.4	0.1	0.17	0.92	0.71	0.79	1.53	7287	883	3	2	0	0	0	logfile
✔	8CG3	16628	2024-11-14	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	8i7W	35235	2024-11-15	2023-02-02	3.39	3.59	3.41	3.7	0.004	0.61	0.0	0.04	18.05	0.00	2.159	11.93	0.55	3.5	96.4	0.1	-0.49	0.66	0.80	1.92	3.7	0.003	0.74	0.0	0.05	18.29	0.00	2.316	10.86	4.81	4.2	95.7	0.1	-0.58	1.37	0.67	0.81	1.86	8461	1080	6	0	1	0	0	logfile
✔	8G1i	29671	2024-11-17	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	21.47	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.55	0.0	0.04	21.19	0.00	2.500	4.01	2.84	4.8	95.2	0.0	-0.53	1.14	0.75	0.79	2.00	13613	1298	4	142	0	0	0	logfile
✔	8i7N	35223	2024-11-15	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	8CDU	16595	2024-11-19	2023-02-01	3.1	2.62	3.02	2.8	0.010	1.55	3.0	0.10	23.32	0.02	2.229	4.96	4.95	6.0	93.2	0.9	-3.44	0.72	0.77	2.32	2.8	0.008	0.92	0.0	0.05	23.57	0.01	2.041	12.04	4.11	5.2	94.6	0.1	-1.05	1.52	0.68	0.71	1.87	51964	2928	22	1340	0	0	0	logfile

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