Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CEA	16602	2024-11-15	2023-02-01	3.94	4.21	3.99	4.2	0.005	1.11	0.0	0.05	14.35	0.01	2.254	6.13	0.00	4.6	95.4	0.0	-1.36	0.65	0.78	0.81	4.2	0.003	0.82	0.0	0.04	16.97	0.00	2.532	10.07	3.75	4.4	95.6	0.0	0.55	0.63	0.64	0.83	0.82	8970	1153	6	0	0	0	0	logfile
✔	8CEC	16605	2024-11-19	2023-02-01	3.57	2.84	3.39	2.8	0.010	1.58	12.0	0.11	23.40	0.02	2.182	8.39	4.35	6.1	93.2	0.7	-3.58	0.74	0.71	2.10	2.7	0.004	0.71	0.0	0.04	23.54	0.01	2.121	12.06	4.07	4.3	95.5	0.2	-0.33	1.14	0.70	0.65	1.81	51964	2928	22	1340	0	0	0	logfile
✔	8i7N	35223	2024-11-15	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	8CE1	16597	2024-11-16	2023-02-01	3.47	3.70	3.42	3.7	0.006	1.08	0.0	0.06	15.03	0.01	2.189	6.45	0.42	2.7	97.2	0.1	-0.68	0.66	0.82	2.33	3.7	0.003	0.65	0.0	0.04	16.16	0.01	2.325	6.71	1.69	2.3	97.7	0.0	1.76	0.97	0.72	0.87	1.82	11438	1462	8	0	0	0	0	logfile
✔	8CE8	16601	2024-11-17	2023-02-01	3.81	4.13	3.80	4.1	0.006	1.20	1.0	0.06	15.73	0.01	2.267	6.99	0.61	2.9	97.0	0.1	-0.56	0.65	0.76	1.19	4.2	0.005	0.77	0.0	0.04	16.68	0.01	2.530	10.84	3.88	2.4	97.5	0.1	1.41	0.64	0.68	0.81	1.24	12674	1620	9	0	0	0	0	logfile
✔	8CDU	16595	2024-11-19	2023-02-01	3.1	2.62	3.02	2.8	0.010	1.55	3.0	0.10	23.32	0.02	2.229	4.96	4.95	6.0	93.2	0.9	-3.44	0.72	0.77	2.32	2.8	0.008	0.92	0.0	0.05	23.57	0.01	2.041	12.04	4.11	5.2	94.6	0.1	-1.05	1.52	0.68	0.71	1.87	51964	2928	22	1340	0	0	0	logfile
✔	8G14	29661	2024-11-15	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8CED	16606	2024-11-19	2023-02-01	4.15	3.12	4.20	3.1	0.009	1.59	17.0	0.11	23.64	0.02	1.605	10.40	3.91	6.4	92.9	0.7	-3.32	0.50	0.64	—	3.1	0.004	0.72	0.0	0.04	22.72	0.01	2.074	14.01	0.00	3.9	95.8	0.3	-0.59	0.82	0.50	0.59	—	51964	2928	22	1340	0	0	0	logfile
✔	8CE4	16598	2024-11-17	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.68	0.0	0.04	17.91	0.00	2.492	9.19	1.76	5.7	94.3	0.0	-1.00	0.88	0.85	0.92	4.57	13435	1645	20	0	20	0	0	logfile
✔	8G16	29663	2024-11-16	2023-02-01	2.07	2.69	2.04	2.3	0.004	0.79	0.0	0.05	16.16	0.01	0.766	4.86	1.21	4.1	95.9	0.0	-1.24	0.88	0.91	5.21	2.4	0.003	0.55	0.0	0.04	15.99	0.01	2.215	8.47	1.21	3.3	96.7	0.0	0.96	1.23	0.88	0.91	5.70	10108	1336	4	0	0	0	4	logfile
✔	8G12	29659	2024-11-15	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.35	0.01	2.547	1.97	0.29	3.1	96.9	0.0	0.69	0.31	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8G13	29660	2024-11-15	2023-02-01	2.3	3.09	2.30	2.7	0.004	0.60	0.0	0.05	14.97	0.00	2.083	5.94	0.86	3.9	96.1	0.0	0.94	0.88	0.92	3.62	2.7	0.005	0.54	0.0	0.05	15.56	0.00	2.416	5.04	1.14	3.5	96.5	0.0	0.55	0.25	0.88	0.93	4.78	10008	1336	4	0	0	0	12	logfile
✔	8CEE	16607	2024-11-19	2023-02-01	3.7	2.86	3.60	3.0	0.009	1.55	15.0	0.11	23.57	0.02	1.876	8.95	3.87	5.9	93.2	0.9	-3.17	0.47	0.65	1.30	2.9	0.002	0.64	0.0	0.04	23.22	0.00	2.126	11.53	2.43	3.3	96.5	0.2	-0.06	1.10	0.49	0.59	1.22	51964	2928	22	1340	0	0	0	logfile
✔	8G17	29664	2024-11-15	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	8G02	29642	2024-11-19	2023-01-31	3.5	2.40	3.57	3.0	0.003	0.61	0.0	0.04	15.73	0.01	2.035	10.28	0.10	1.9	98.1	0.0	0.87	0.68	0.69	1.89	2.7	0.003	0.58	0.0	0.04	16.65	0.00	2.402	9.18	2.40	3.1	96.9	0.0	0.90	0.58	0.67	0.70	1.86	18194	1148	6	0	0	0	9228	logfile
✔	8G04	29644	2024-11-14	2023-01-31	3.4	3.70	3.42	3.6	0.005	0.66	0.0	0.04	11.25	0.01	2.229	6.36	2.28	3.2	96.8	0.0	0.42	0.82	0.82	2.73	3.6	0.003	0.68	0.0	0.04	13.24	0.00	2.505	6.01	2.55	3.6	96.4	0.0	0.55	0.41	0.82	0.82	2.21	7314	944	5	0	12	0	0	logfile
✔	8G09	29650	2024-11-19	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.66	0.0	0.23	7.86	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.007	0.86	0.0	0.04	7.24	0.00	1.656	0.55	0.00	10.1	89.9	0.0	0.43	0.70	0.81	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	8G08	29649	2024-11-19	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.63	0.0	0.23	7.67	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.006	0.74	0.0	0.03	6.65	0.00	1.693	0.20	0.00	7.4	92.6	0.0	1.41	1.56	0.82	0.81	—	19595	4859	26	0	10	0	0	logfile
✔	8G0C	29653	2024-11-19	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.63	0.0	0.21	9.61	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.005	0.72	0.0	0.04	7.14	0.00	1.780	0.16	0.00	6.9	93.1	0.0	1.70	1.18	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8CDJ	16575	2024-11-17	2023-01-31	3.4	2.42	3.23	2.1	0.003	0.57	0.0	0.04	13.02	0.00	2.173	4.91	0.00	1.5	98.5	0.0	1.53	0.80	0.79	2.48	2.1	0.003	0.58	0.0	0.04	15.35	0.00	2.465	4.36	1.92	2.2	97.8	0.0	1.84	0.39	0.81	0.82	1.95	13623	2001	5	0	0	0	0	logfile

• ← previous
• Page 139 of 419
• next →