Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0C	29653	2024-11-19	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.63	0.0	0.21	9.61	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.005	0.72	0.0	0.04	7.14	0.00	1.780	0.16	0.00	6.9	93.1	0.0	1.70	1.18	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8G08	29649	2024-11-19	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.63	0.0	0.23	7.67	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.006	0.74	0.0	0.03	6.65	0.00	1.693	0.20	0.00	7.4	92.6	0.0	1.41	1.56	0.82	0.81	—	19595	4859	26	0	10	0	0	logfile
✔	8G02	29642	2024-11-19	2023-01-31	3.5	2.40	3.57	3.0	0.003	0.61	0.0	0.04	15.73	0.01	2.035	10.28	0.10	1.9	98.1	0.0	0.87	0.68	0.69	1.89	2.7	0.003	0.58	0.0	0.04	16.65	0.00	2.402	9.18	2.40	3.1	96.9	0.0	0.90	0.58	0.67	0.70	1.86	18194	1148	6	0	0	0	9228	logfile
✔	8CDP	16592	2024-11-14	2023-01-31	3.4	4.25	3.44	3.9	0.003	0.78	1.0	0.05	12.96	0.00	2.247	11.14	0.36	2.3	97.7	0.0	0.12	0.89	0.83	2.17	3.9	0.004	0.68	0.0	0.04	14.69	0.00	2.468	9.49	1.42	3.1	96.9	0.0	-0.04	0.43	0.90	0.84	1.68	5200	654	2	0	0	0	0	logfile
✔	8G01	29641	2024-11-18	2023-01-31	3.4	2.36	3.52	2.8	0.002	0.44	0.0	0.04	11.41	0.00	2.029	3.31	0.00	1.0	99.0	0.0	2.02	0.68	0.71	1.84	2.8	0.003	0.57	0.0	0.04	15.52	0.00	2.389	7.99	2.52	2.0	98.0	0.0	0.99	0.82	0.71	0.76	2.03	18152	1148	6	0	0	0	9214	logfile
✔	8G05	29645	2024-11-15	2023-01-31	3.0	3.16	2.98	3.1	0.007	0.91	0.0	0.14	14.31	0.01	2.257	4.54	0.62	3.6	96.4	0.0	-3.23	0.64	0.77	3.11	3.1	0.003	0.66	0.0	0.04	16.36	0.00	2.495	7.63	2.69	2.7	97.3	0.0	-0.20	0.57	0.64	0.78	2.89	8944	1140	6	0	2	0	0	logfile
✔	8CDJ	16575	2024-11-17	2023-01-31	3.4	2.42	3.23	2.1	0.003	0.57	0.0	0.04	13.02	0.00	2.173	4.91	0.00	1.5	98.5	0.0	1.53	0.80	0.79	2.48	2.1	0.003	0.58	0.0	0.04	15.35	0.00	2.465	4.36	1.92	2.2	97.8	0.0	1.84	0.39	0.81	0.82	1.95	13623	2001	5	0	0	0	0	logfile
✔	8CDD	16569	2024-11-17	2023-01-30	3.0	3.95	—	3.5	0.003	0.66	0.0	0.04	17.78	0.00	2.169	13.80	3.61	5.6	94.4	0.0	-0.95	0.86	0.80	1.56	3.5	0.003	0.74	0.0	0.05	17.54	0.00	2.286	11.33	3.74	6.3	93.7	0.0	-0.78	0.92	0.86	0.81	1.82	13139	1633	5	0	0	0	0	logfile
✔	8CDE	16570	2024-11-16	2023-01-30	3.1	4.00	—	3.7	0.003	0.71	0.0	0.05	16.55	0.00	2.129	8.14	3.94	7.8	92.2	0.0	-1.84	0.82	0.74	1.88	3.7	0.004	0.72	0.0	0.04	16.82	0.00	2.475	11.11	4.36	6.3	93.7	0.0	-1.25	0.52	0.83	0.77	2.09	10464	1317	4	0	0	0	0	logfile
✔	8FZT	29639	2024-11-17	2023-01-30	3.03	2.19	3.20	2.1	0.004	0.63	0.0	0.04	20.77	0.00	2.205	5.74	0.68	6.9	93.1	0.0	-1.36	0.78	0.78	2.09	2.1	0.003	0.56	0.0	0.04	20.62	0.00	2.506	3.55	2.12	5.1	94.9	0.0	-0.59	0.34	0.76	0.79	2.28	13925	1319	5	149	0	0	0	logfile
✔	8i6Q	35203	2024-11-14	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.419	6.00	0.00	9.1	90.8	0.1	-0.66	0.42	0.68	0.82	—	3975	810	4	0	0	0	0	logfile
✔	8i6R	35204	2024-11-15	2023-01-29	4.0	5.22	4.04	4.2	0.006	1.03	0.0	0.04	15.43	0.00	1.797	22.17	1.66	6.8	93.1	0.1	-0.44	0.75	0.84	—	4.3	0.004	0.82	0.0	0.04	16.88	0.00	2.112	16.22	3.69	7.5	92.4	0.1	-0.24	0.96	0.75	0.85	—	7757	1011	6	0	3	0	0	logfile
✔	8i6o	35201	2024-11-15	2023-01-29	3.8	4.30	4.03	4.2	0.003	0.66	0.0	0.04	15.30	0.00	2.135	8.12	0.61	4.3	95.7	0.0	0.14	0.74	0.81	0.86	4.2	0.003	0.72	0.0	0.04	17.68	0.00	2.135	8.23	3.48	4.6	95.4	0.0	0.45	1.19	0.74	0.82	0.70	9084	1196	5	0	0	0	0	logfile
✔	8FZQ	29637	2024-11-15	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	15.43	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.002	0.60	0.0	0.04	14.66	0.00	1.962	8.63	0.10	2.1	97.9	0.0	1.13	0.99	0.63	0.77	—	9244	1133	3	0	23	0	0	logfile
✔	8i6S	35205	2024-11-15	2023-01-29	4.4	4.82	4.39	4.4	0.006	1.39	2.0	0.06	16.40	0.01	2.073	4.55	0.97	4.1	95.7	0.2	-5.18	0.73	0.60	—	4.4	0.002	0.71	0.0	0.04	16.03	0.00	1.912	9.97	1.08	3.9	96.1	0.1	0.17	0.49	0.74	0.63	—	8641	1125	7	0	4	0	0	logfile
✔	8CD0	16565	2024-11-14	2023-01-29	2.42	2.00	—	2.8	0.007	1.25	0.0	0.07	17.39	0.01	2.122	3.48	2.03	3.7	96.3	0.0	-3.15	0.67	0.70	1.80	2.8	0.003	0.61	0.0	0.04	17.60	0.00	2.365	9.98	2.85	3.7	96.3	0.0	0.03	0.85	0.70	0.72	1.99	6860	837	5	1	1	4	0	logfile
✔	8i6J	35199	2024-11-14	2023-01-28	3.82	4.03	3.74	4.0	0.003	0.70	0.0	0.05	14.72	0.00	2.265	7.93	0.17	9.6	90.4	0.0	-0.94	0.63	0.71	0.83	4.0	0.003	0.71	0.0	0.04	16.80	0.00	2.492	7.56	2.75	9.6	90.4	0.0	-0.70	0.51	0.62	0.71	0.58	5287	670	3	0	1	0	0	logfile
✔	8FZ5	29603	2024-11-18	2023-01-27	2.23	2.37	2.30	2.4	0.005	0.60	0.0	0.05	14.80	0.01	2.247	4.31	0.19	1.4	98.6	0.0	1.51	0.81	0.91	5.22	2.4	0.003	0.56	0.0	0.04	16.72	0.00	2.384	4.53	1.80	1.3	98.7	0.0	1.83	1.71	0.82	0.91	4.92	48892	6280	28	0	0	0	0	logfile
✔	8CC7	16557	2024-11-18	2023-01-26	3.0	3.51	3.03	3.5	0.004	0.65	0.0	0.04	15.13	0.00	2.239	5.22	0.55	1.4	98.6	0.0	2.00	0.60	0.76	3.22	3.5	0.005	0.60	0.0	0.04	15.35	0.00	2.498	4.80	1.87	1.9	98.1	0.0	1.64	1.65	0.64	0.80	3.10	16650	1950	20	0	30	0	0	logfile
✔	8CC6	16555	2024-11-18	2023-01-26	3.2	3.42	3.26	3.4	0.004	0.60	0.0	0.04	14.78	0.00	2.207	4.14	0.05	2.0	98.0	0.0	1.09	0.71	0.85	3.05	3.4	0.003	0.53	0.0	0.04	15.22	0.00	2.561	4.53	1.76	2.1	97.9	0.0	1.40	0.23	0.70	0.85	2.98	16640	1950	20	0	30	0	0	logfile

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