Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CC6	16555	2024-11-18	2023-01-26	3.2	3.42	3.26	3.4	0.004	0.60	0.0	0.04	14.78	0.00	2.207	4.14	0.05	2.0	98.0	0.0	1.09	0.71	0.85	3.05	3.4	0.003	0.53	0.0	0.04	15.22	0.00	2.561	4.53	1.76	2.1	97.9	0.0	1.40	0.23	0.70	0.85	2.98	16640	1950	20	0	30	0	0	logfile
✔	8FYJ	29580	2024-11-19	2023-01-26	4.0	4.20	3.96	4.1	0.005	0.87	0.0	0.05	18.49	0.01	2.105	17.30	0.61	5.5	94.5	0.0	-1.55	0.75	0.80	—	4.1	0.003	0.78	0.0	0.05	16.41	0.00	2.454	13.68	4.39	6.0	94.0	0.0	-1.22	0.98	0.76	0.80	—	15027	1850	20	0	34	0	0	logfile
✔	8FYF	29572	2024-11-17	2023-01-26	3.4	3.26	3.38	3.4	0.003	0.58	0.0	0.04	14.09	0.00	2.218	5.61	0.14	2.7	97.3	0.0	2.89	0.57	0.83	1.72	3.4	0.003	0.53	0.0	0.04	14.74	0.00	2.433	4.17	1.29	2.2	97.8	0.0	3.48	0.35	0.55	0.85	1.63	13202	830	4	0	0	0	6754	logfile
✔	8CBo	16547	2024-11-16	2023-01-25	3.2	3.94	3.14	3.5	0.005	0.61	1.0	0.04	17.26	0.00	2.203	5.62	0.21	4.3	95.7	0.0	0.61	0.85	0.79	2.67	3.5	0.003	0.68	0.0	0.04	17.54	0.00	2.473	8.76	0.73	2.0	98.0	0.0	1.53	1.59	0.88	0.88	1.92	10574	1232	11	58	4	0	0	logfile
✔	8CBL	16544	2024-11-18	2023-01-25	2.79	3.77	—	3.4	0.004	0.55	0.0	0.04	17.01	0.00	1.890	6.00	0.00	3.7	96.3	0.0	0.78	0.82	0.77	2.59	3.4	0.004	0.88	0.0	0.05	18.05	0.01	2.304	11.68	1.66	3.2	96.8	0.1	0.65	0.75	0.80	0.85	2.19	17260	2007	13	86	5	0	0	logfile
✔	8CBK	16543	2024-11-18	2023-01-25	2.76	3.67	—	3.4	0.004	0.56	0.0	0.04	16.81	0.00	1.908	6.21	0.13	4.0	96.0	0.1	1.72	0.80	0.88	2.68	3.4	0.003	0.75	0.0	0.04	17.72	0.00	2.039	8.14	1.26	2.6	97.4	0.0	1.22	0.59	0.79	0.87	2.47	16221	1834	17	93	6	8	0	logfile
✔	8FYA	29562	2024-11-16	2023-01-25	2.91	3.09	2.90	3.1	0.003	0.51	0.0	0.04	16.99	0.00	2.172	12.11	0.09	2.7	97.3	0.0	1.24	0.68	0.78	2.17	3.1	0.003	0.58	0.0	0.04	19.79	0.00	2.095	10.82	3.38	2.3	97.7	0.0	1.17	1.17	0.69	0.81	2.19	11433	1304	8	59	0	0	0	logfile
✔	8FYB	29563	2024-11-17	2023-01-25	3.1	3.33	3.15	3.3	0.004	0.60	0.0	0.04	20.88	0.00	2.211	12.15	0.09	3.6	96.4	0.0	0.63	0.71	0.78	2.70	3.3	0.005	0.61	0.0	0.04	22.44	0.00	2.443	11.92	1.08	3.6	96.4	0.0	0.68	1.69	0.70	0.79	2.32	13486	1359	10	136	0	0	0	logfile
✔	8FYD	29565	2024-11-17	2023-01-25	3.9	4.29	4.11	4.2	0.003	0.58	0.0	0.04	22.39	0.00	2.196	15.08	0.00	3.4	96.6	0.0	-0.04	0.81	0.79	1.75	4.2	0.004	0.74	0.0	0.04	23.01	0.00	2.216	15.50	1.85	4.0	96.0	0.0	-0.08	1.20	0.81	0.79	1.43	13612	1325	10	156	0	0	0	logfile
✔	8FYC	29564	2024-11-17	2023-01-25	4.1	4.43	4.15	4.1	0.004	0.68	2.0	0.05	20.67	0.00	2.196	18.87	0.25	3.2	96.7	0.1	-0.60	0.82	0.74	—	4.1	0.003	0.68	0.0	0.04	21.44	0.00	2.132	15.76	0.00	3.4	96.6	0.0	-0.61	1.29	0.82	0.74	—	14575	1475	11	145	0	0	0	logfile
✔	8FY9	29561	2024-11-16	2023-01-25	3.1	3.32	3.15	3.3	0.003	0.52	0.0	0.04	17.51	0.00	2.209	11.22	0.00	3.1	96.9	0.0	0.86	0.70	0.77	2.18	3.3	0.003	0.54	0.0	0.04	19.03	0.00	2.449	9.75	2.10	2.7	97.3	0.0	1.22	1.17	0.69	0.78	2.27	10742	1228	8	56	0	0	0	logfile
✔	8FY5	29553	2024-11-17	2023-01-25	3.5	3.48	3.38	3.5	0.004	0.61	0.0	0.04	14.57	0.01	2.139	4.47	0.00	2.4	97.6	0.0	2.45	0.57	0.85	3.20	3.5	0.004	0.57	0.0	0.04	14.95	0.00	2.433	4.62	1.72	2.6	97.4	0.0	2.94	0.46	0.59	0.86	3.59	13202	830	4	0	0	0	6754	logfile
✔	8CBQ	16549	2024-11-17	2023-01-25	4.0	4.37	3.88	4.2	0.008	0.72	0.0	0.04	26.20	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.75	0.74	—	4.2	0.005	0.82	0.0	0.04	27.73	0.01	2.132	17.94	4.63	2.8	97.2	0.0	-0.03	1.96	0.78	0.81	—	12959	853	11	300	0	0	0	logfile
✔	8CBN	16546	2024-11-17	2023-01-25	3.34	3.92	3.27	3.7	0.008	0.72	0.0	0.04	25.79	0.01	0.876	6.35	2.28	4.8	95.2	0.0	-5.72	0.71	0.78	1.77	3.7	0.004	0.66	0.0	0.04	27.00	0.00	2.183	8.28	4.94	3.4	96.6	0.0	1.00	0.82	0.72	0.84	1.32	13669	939	12	300	0	0	0	logfile
✔	8FY4	29552	2024-11-15	2023-01-25	2.57	2.06	2.58	2.8	0.003	0.57	0.0	0.04	14.87	0.00	2.189	8.90	1.87	1.8	98.2	0.0	2.42	0.63	0.62	1.36	1.9	0.003	0.57	0.0	0.04	17.35	0.00	2.502	7.82	2.57	2.2	97.8	0.0	2.00	1.16	0.79	0.79	2.90	7800	989	3	0	0	0	0	logfile
✔	8FXB	29530	2024-11-15	2023-01-24	3.1	3.37	3.14	3.5	0.011	1.21	1.0	0.07	10.52	0.01	2.024	5.30	0.59	3.2	96.4	0.4	-0.59	0.64	0.70	2.98	3.5	0.005	0.71	0.0	0.04	14.75	0.00	2.496	6.34	1.54	4.6	95.4	0.0	0.11	1.19	0.65	0.76	2.55	7912	976	6	0	7	0	0	logfile
✔	8CAU	16534	2024-11-17	2023-01-24	3.4	4.09	3.51	3.8	0.003	0.52	0.0	0.04	16.19	0.00	2.033	21.48	0.14	8.4	91.6	0.0	-3.17	0.90	0.89	4.04	3.8	0.005	0.79	0.0	0.05	15.42	0.00	2.467	6.11	1.06	8.2	91.8	0.0	-1.78	1.01	0.89	0.92	3.61	13545	1635	20	0	25	0	0	logfile
✔	8CAX	16535	2024-11-14	2023-01-24	3.7	3.92	3.26	4.2	0.009	1.65	6.0	0.09	14.83	0.01	2.271	8.26	4.55	9.6	90.4	0.0	-3.97	0.46	0.83	4.11	4.2	0.005	0.99	0.0	0.05	16.36	0.01	2.535	11.81	3.54	8.7	91.3	0.0	-2.49	3.38	0.39	0.77	4.36	3444	450	6	0	0	0	0	logfile
✔	8FXC	29531	2024-11-14	2023-01-24	3.2	3.50	3.23	3.6	0.011	1.40	3.0	0.10	11.35	0.01	2.403	4.68	1.91	3.3	96.0	0.7	-1.21	0.67	0.74	3.85	3.6	0.003	0.60	0.0	0.04	13.94	0.00	2.190	4.54	1.32	2.8	97.2	0.0	0.40	0.54	0.68	0.79	3.11	7639	1002	6	0	8	0	0	logfile
✔	8i54	35191	2024-11-20	2023-01-24	3.95	4.70	4.01	4.1	0.013	1.03	0.0	0.05	19.00	0.01	2.207	13.04	0.98	12.8	86.8	0.4	-3.16	0.85	0.69	0.32	4.1	0.003	0.62	0.0	0.04	19.74	0.00	2.058	17.65	1.37	14.5	85.3	0.2	-3.27	0.58	0.86	0.72	0.86	19661	1113	4	67	0	0	9100	logfile

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