Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HXZ	35083	2024-11-17	2023-01-05	3.4	4.97	3.38	2.8	0.005	0.98	0.0	0.05	29.12	0.01	2.303	7.66	0.00	3.0	97.0	0.0	-1.57	0.89	0.77	0.71	2.9	0.004	0.84	0.0	0.04	28.65	0.00	2.343	16.54	1.78	2.9	97.1	0.0	0.17	1.27	0.92	0.86	0.62	13740	879	11	328	0	0	0	logfile
✔	8FQA	29381	2024-11-15	2023-01-05	3.35	2.93	3.36	3.2	0.015	0.74	0.0	0.06	19.08	0.00	2.225	9.52	0.34	3.4	96.6	0.0	0.12	0.61	0.76	1.45	3.2	0.003	0.57	0.0	0.04	18.63	0.00	2.585	7.67	4.03	3.4	96.6	0.0	-0.31	0.43	0.62	0.77	1.40	8386	1064	16	0	4	4	0	logfile
✔	8FPZ	29372	2024-11-15	2023-01-05	3.01	2.78	2.95	3.0	0.015	0.73	0.0	0.06	17.38	0.00	2.216	7.62	0.11	2.6	97.4	0.0	-0.61	0.59	0.82	2.41	3.0	0.002	0.53	0.0	0.04	16.74	0.00	2.567	6.84	1.79	3.4	96.6	0.0	-0.24	0.89	0.59	0.82	1.95	8392	1064	16	0	4	10	0	logfile
✔	8FQ8	29380	2024-11-15	2023-01-05	3.11	2.81	3.14	3.1	0.015	0.74	0.0	0.06	18.29	0.00	2.160	8.39	0.34	3.4	96.6	0.1	-0.44	0.64	0.81	1.73	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.552	6.96	3.02	2.6	97.3	0.1	0.09	0.36	0.64	0.81	1.50	8392	1064	16	0	4	10	0	logfile
✔	8FQ3	29376	2024-11-15	2023-01-05	3.17	2.87	3.07	3.0	0.015	0.70	0.0	0.06	17.77	0.00	2.185	8.98	0.00	2.7	97.3	0.0	-0.25	0.56	0.74	2.37	3.1	0.004	0.58	0.0	0.04	17.07	0.00	2.403	9.22	4.81	5.0	95.0	0.0	-0.57	0.89	0.57	0.75	2.44	8386	1064	16	0	4	4	0	logfile
✔	8FPS	29369	2024-11-16	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.45	0.00	2.548	3.22	0.55	0.9	99.1	0.0	4.15	0.26	0.61	0.85	3.68	10602	1338	20	0	4	152	0	logfile
✔	8FQ6	29379	2024-11-15	2023-01-05	3.14	2.92	3.12	3.1	0.015	0.70	0.0	0.06	18.12	0.00	2.275	5.35	0.00	3.5	96.5	0.0	-0.55	0.67	0.85	2.02	3.1	0.002	0.51	0.0	0.04	17.56	0.00	2.605	5.35	2.35	2.5	97.5	0.0	-0.24	0.32	0.66	0.85	2.10	8398	1064	16	0	4	16	0	logfile
✔	8FPV	29370	2024-11-15	2023-01-05	3.08	2.61	3.00	3.0	0.015	0.72	0.0	0.06	17.49	0.00	2.254	6.72	0.22	3.2	96.8	0.0	-0.33	0.60	0.84	2.73	3.0	0.002	0.55	0.0	0.04	17.62	0.00	2.536	6.78	2.68	2.3	97.7	0.0	-0.26	0.89	0.60	0.85	2.55	8394	1064	16	0	4	12	0	logfile
✔	8FPY	29371	2024-11-15	2023-01-05	2.98	2.45	2.88	3.0	0.015	0.70	0.0	0.06	19.34	0.00	2.069	8.15	2.68	1.9	98.1	0.0	-0.27	0.56	0.82	1.41	3.0	0.003	0.58	0.0	0.04	17.97	0.00	2.432	9.58	4.70	2.1	97.9	0.0	-0.26	0.89	0.56	0.83	1.68	8392	1064	16	0	4	10	0	logfile
✔	8FQ2	29375	2024-11-15	2023-01-05	3.14	2.91	2.99	3.1	0.015	0.76	0.0	0.06	15.95	0.00	2.031	9.44	0.67	4.7	95.3	0.0	-0.58	0.56	0.71	1.71	3.1	0.003	0.61	0.0	0.04	17.16	0.00	2.144	7.84	1.56	4.8	95.2	0.0	-0.98	1.23	0.59	0.76	1.51	8390	1064	12	0	4	0	0	logfile
✔	8FPH	29364	2024-11-15	2023-01-04	3.14	2.73	3.09	3.2	0.015	0.72	0.0	0.06	17.89	0.00	2.229	7.38	0.11	3.0	97.0	0.0	-0.80	0.64	0.83	2.63	3.1	0.003	0.58	0.0	0.04	17.03	0.00	2.557	6.66	3.13	2.7	97.3	0.0	-0.80	0.38	0.64	0.84	2.89	8388	1064	16	0	4	6	0	logfile
✔	8C4V	16430	2024-11-16	2023-01-04	3.14	3.23	3.09	3.2	0.007	1.01	7.0	0.07	19.43	0.01	1.935	13.76	2.51	4.3	95.7	0.0	-0.71	0.74	0.81	2.54	3.2	0.005	0.63	0.0	0.04	19.38	0.00	1.915	11.70	3.89	3.7	96.3	0.0	0.16	1.14	0.73	0.81	2.56	11731	1308	7	56	1	0	0	logfile
✔	8FPL	29368	2024-11-15	2023-01-04	2.81	2.59	2.78	2.8	0.018	0.79	0.0	0.06	17.84	0.00	2.177	7.23	0.35	1.3	98.7	0.0	0.21	0.69	0.87	4.38	2.8	0.002	0.51	0.0	0.04	17.17	0.00	2.494	5.51	1.97	1.1	98.9	0.0	0.45	0.29	0.69	0.87	3.89	8178	1024	8	0	8	0	0	logfile
✔	8HXA	35074	2024-11-17	2023-01-04	3.04	3.23	3.02	3.2	0.005	1.06	0.0	0.06	15.67	0.01	2.023	5.42	0.18	5.1	94.6	0.3	-0.78	0.68	0.80	2.73	3.2	0.003	0.62	0.0	0.05	16.79	0.00	2.337	8.36	3.71	4.8	94.8	0.3	-0.66	0.42	0.69	0.83	3.57	14790	1842	12	0	0	0	0	logfile
✔	8C4U	16429	2024-11-16	2023-01-04	3.36	3.57	3.40	3.5	0.005	0.74	1.0	0.05	17.89	0.00	2.058	7.62	0.81	3.7	96.3	0.0	0.43	0.77	0.83	2.59	3.5	0.002	0.52	0.0	0.04	18.08	0.00	2.066	6.23	1.62	2.8	97.2	0.0	1.34	1.15	0.79	0.84	2.39	10952	1260	4	38	1	0	0	logfile
✔	8FPG	29363	2024-11-16	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.04	16.23	0.00	2.605	3.94	2.21	3.5	96.5	0.0	4.48	0.29	0.58	0.83	4.00	10674	1348	20	0	4	187	0	logfile
✔	8FPK	29367	2024-11-15	2023-01-04	2.76	2.16	2.74	2.8	0.018	0.76	0.0	0.06	18.10	0.00	2.164	6.20	1.05	2.3	97.7	0.0	-0.24	0.63	0.84	2.89	2.8	0.002	0.50	0.0	0.04	17.44	0.00	2.515	6.63	0.58	1.8	98.2	0.0	-0.19	0.86	0.62	0.84	2.48	8156	1024	8	0	8	0	0	logfile
✔	8FPC	29361	2024-11-15	2023-01-04	2.78	2.77	2.80	2.9	0.015	0.72	0.0	0.06	18.67	0.00	2.235	5.65	2.35	2.2	97.8	0.0	-0.03	0.66	0.87	2.83	2.9	0.002	0.51	0.0	0.04	17.58	0.00	2.619	5.89	2.80	1.6	98.4	0.0	0.32	0.25	0.64	0.86	2.35	8400	1064	16	0	4	18	0	logfile
✔	8C4S	16427	2024-11-16	2023-01-04	3.27	3.46	3.25	3.3	0.005	0.85	6.0	0.05	15.99	0.00	2.258	8.25	1.24	2.9	96.9	0.2	1.15	0.82	0.85	2.80	3.3	0.004	0.59	0.0	0.04	16.24	0.00	2.534	7.04	2.74	3.0	96.8	0.2	1.38	0.35	0.83	0.86	3.12	10292	1277	1	0	0	0	0	logfile
✔	8HXK	35079	2024-11-16	2023-01-04	3.8	4.30	4.02	4.0	0.005	1.00	0.0	0.06	14.61	0.01	2.159	12.80	0.00	9.1	90.9	0.0	-2.65	0.74	0.49	0.10	4.0	0.003	0.79	0.0	0.05	16.26	0.00	2.299	17.39	1.96	9.1	90.9	0.0	-1.91	1.04	0.82	0.69	0.64	10340	1273	6	0	9	0	0	logfile

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