Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FPG	29363	2024-11-16	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.04	16.23	0.00	2.605	3.94	2.21	3.5	96.5	0.0	4.48	0.29	0.58	0.83	4.00	10674	1348	20	0	4	187	0	logfile
✔	8HXC	35076	2024-11-18	2023-01-04	3.12	3.40	3.39	3.4	0.007	1.20	0.0	0.07	16.37	0.01	1.987	5.40	1.05	6.9	93.1	0.0	-1.46	0.64	0.75	2.25	3.4	0.003	0.70	0.0	0.05	16.65	0.00	2.556	7.72	3.21	6.7	93.3	0.0	-1.43	0.62	0.71	0.82	2.76	17374	2149	14	0	0	0	0	logfile
✔	8C4S	16427	2024-11-16	2023-01-04	3.27	3.46	3.25	3.3	0.005	0.85	6.0	0.05	15.99	0.00	2.258	8.25	1.24	2.9	96.9	0.2	1.15	0.82	0.85	2.80	3.3	0.004	0.59	0.0	0.04	16.24	0.00	2.534	7.04	2.74	3.0	96.8	0.2	1.38	0.35	0.83	0.86	3.12	10292	1277	1	0	0	0	0	logfile
✔	8HWZ	35069	2024-11-17	2023-01-03	3.56	3.98	3.90	4.1	0.003	0.62	0.0	0.04	14.52	0.01	2.103	12.00	0.00	0.9	99.1	0.0	4.47	0.78	0.84	1.82	4.1	0.003	0.57	0.0	0.03	17.04	0.00	2.492	9.00	3.58	1.9	98.1	0.0	4.17	1.03	0.76	0.84	1.78	13625	1751	12	0	0	0	0	logfile
✔	8HX1	35071	2024-11-17	2023-01-03	3.29	3.53	3.34	3.5	0.005	0.63	0.0	0.04	13.93	0.00	2.182	3.33	0.00	1.2	98.8	0.0	3.33	0.75	0.83	2.28	3.5	0.006	0.58	0.0	0.04	15.82	0.00	2.506	2.72	1.76	2.3	97.7	0.0	2.73	0.26	0.69	0.83	1.81	14919	1926	12	0	0	0	0	logfile
✔	8HX0	35070	2024-11-17	2023-01-03	2.9	3.26	3.11	3.2	0.003	0.55	0.0	0.04	13.32	0.00	2.234	5.10	0.06	0.5	99.5	0.0	3.64	0.69	0.85	3.53	3.2	0.005	0.55	0.0	0.04	15.07	0.00	2.516	2.55	1.19	1.3	98.7	0.0	3.13	0.78	0.67	0.86	3.18	14919	1926	12	0	0	0	0	logfile
✔	8HWT	35064	2024-11-16	2023-01-02	2.91	2.42	2.95	2.1	0.003	0.56	0.0	0.04	12.84	0.00	2.241	6.29	0.22	4.0	96.0	0.0	0.29	0.72	0.74	3.81	2.1	0.003	0.59	0.0	0.04	15.10	0.01	2.594	5.34	1.98	4.6	95.4	0.0	0.43	0.33	0.78	0.81	3.61	8077	1058	5	0	0	0	0	logfile
✔	8HWS	35063	2024-11-19	2023-01-02	2.36	2.29	2.51	2.0	0.004	0.57	0.0	0.04	15.87	0.00	2.174	7.59	3.26	3.4	96.6	0.0	0.53	0.78	0.78	3.76	2.0	0.004	0.59	0.0	0.04	15.88	0.00	2.529	6.62	2.80	3.8	96.2	0.0	0.69	0.25	0.81	0.83	3.61	11511	1508	8	0	3	0	0	logfile
✔	8HWQ	35062	2024-11-20	2023-01-02	3.58	3.88	3.67	3.8	0.003	0.68	0.0	0.04	17.35	0.00	2.253	8.78	0.21	6.4	93.4	0.3	-1.29	0.60	0.75	1.95	3.8	0.005	0.74	0.0	0.04	18.00	0.00	2.561	9.87	2.59	6.7	93.3	0.0	-1.51	1.27	0.61	0.77	1.91	20783	2576	7	0	0	0	0	logfile
✔	8C44	16416	2024-11-14	2022-12-31	3.2	3.59	3.22	3.5	0.020	1.66	0.0	0.10	12.79	0.02	2.336	10.29	0.54	3.1	96.9	0.0	1.28	0.67	0.71	2.67	3.5	0.004	0.65	0.0	0.04	16.34	0.00	2.457	10.68	1.79	2.2	97.8	0.0	1.41	1.55	0.64	0.74	2.45	5239	623	3	0	2	0	0	logfile
✔	8FoB	29344	2024-11-20	2022-12-30	2.71	2.96	2.77	3.0	0.024	1.57	0.0	0.54	21.84	0.01	2.073	8.34	0.39	8.3	91.7	0.0	-5.44	0.60	0.72	2.77	3.0	0.003	0.76	0.0	0.04	16.80	0.00	1.723	10.93	2.37	7.3	92.7	0.0	-0.68	1.12	0.58	0.74	2.46	20390	2376	12	0	46	52	0	logfile
✔	8FoD	29346	2024-11-18	2022-12-30	3.8	3.04	3.70	3.8	0.006	0.83	0.0	0.05	14.42	0.01	2.167	9.55	0.27	2.8	97.1	0.1	0.31	0.69	0.61	1.32	3.8	0.004	0.68	0.0	0.04	15.92	0.00	2.534	9.67	1.43	2.8	97.2	0.0	0.66	1.93	0.69	0.62	1.14	17489	2224	5	0	1	0	0	logfile
✔	8FoC	29345	2024-11-19	2022-12-30	3.7	3.17	3.67	3.6	0.005	0.67	0.0	0.04	14.50	0.01	2.236	9.15	0.39	1.5	98.5	0.1	1.23	0.73	0.68	1.71	3.6	0.004	0.61	0.0	0.04	15.79	0.00	2.551	8.71	2.46	2.2	97.8	0.0	1.10	0.60	0.75	0.71	1.60	18382	2287	5	0	1	0	0	logfile
✔	8FoH	29349	2024-11-18	2022-12-30	4.6	4.87	4.51	4.3	0.013	1.46	4.0	0.09	13.11	0.01	1.447	3.87	0.49	2.6	97.3	0.1	-0.42	0.89	0.68	—	4.3	0.003	0.57	0.0	0.04	13.10	0.00	2.514	7.77	0.00	1.5	98.5	0.0	2.13	1.27	0.94	0.81	—	16996	2048	7	20	1	0	0	logfile
✔	8FoJ	29351	2024-11-18	2022-12-30	4.8	3.41	4.43	3.3	0.009	0.90	1.0	0.04	13.63	0.01	2.138	9.71	0.05	3.7	96.3	0.0	0.08	0.80	0.61	—	3.3	0.004	0.65	0.0	0.04	14.18	0.00	2.429	11.44	0.11	4.3	95.7	0.0	-0.03	1.30	0.82	0.66	—	17538	2151	7	21	1	0	0	logfile
✔	8HWF	35056	2024-11-19	2022-12-29	3.3	3.50	3.27	3.4	0.003	0.66	0.0	0.04	17.29	0.00	2.039	8.34	0.15	4.7	95.3	0.0	-1.24	0.76	0.87	2.45	3.4	0.004	0.64	0.0	0.04	17.65	0.00	1.981	6.14	2.54	5.6	94.4	0.0	-0.34	0.34	0.75	0.87	2.40	18441	2251	13	6	9	0	0	logfile
✔	8C3Y	16415	2024-11-14	2022-12-29	3.8	4.37	3.84	4.1	0.018	1.56	0.0	0.10	10.95	0.01	2.226	7.90	0.48	3.7	96.0	0.3	0.34	0.79	0.76	0.80	4.1	0.004	0.79	0.0	0.04	16.09	0.01	2.437	14.99	2.42	5.0	94.7	0.3	0.74	2.75	0.78	0.77	1.09	7580	929	1	0	0	0	0	logfile
✔	8HWD	35054	2024-11-18	2022-12-29	3.3	3.51	3.30	3.5	0.004	0.73	0.0	0.04	18.03	0.00	2.199	14.55	1.25	8.6	91.3	0.1	-1.70	0.67	0.73	1.46	3.5	0.003	0.71	0.0	0.04	18.20	0.00	2.319	9.53	3.93	7.6	92.4	0.0	-1.31	0.43	0.67	0.75	1.43	15029	1834	12	0	6	0	0	logfile
✔	8HWC	35053	2024-11-17	2022-12-29	3.3	3.53	3.33	3.5	0.003	0.60	0.0	0.04	16.49	0.00	2.245	10.08	0.30	6.5	93.5	0.0	-1.80	0.69	0.76	2.11	3.5	0.003	0.63	0.0	0.04	16.91	0.00	2.532	6.09	2.13	6.1	93.9	0.0	-1.56	1.20	0.71	0.82	2.11	14943	1836	6	0	0	0	0	logfile
✔	8HWG	35057	2024-11-19	2022-12-29	3.0	3.09	2.85	3.0	0.004	0.66	0.0	0.04	18.54	0.00	1.832	7.63	4.33	6.0	93.9	0.0	-1.90	0.76	0.87	3.15	3.0	0.003	0.62	0.0	0.04	18.59	0.00	1.883	5.01	3.53	5.1	94.9	0.0	-0.74	1.13	0.76	0.88	2.82	18110	2209	13	6	12	0	0	logfile

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