Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HWH	35058	2024-11-18	2022-12-29	3.6	3.88	3.70	3.8	0.003	0.71	0.0	0.04	17.52	0.00	2.198	10.76	0.42	4.9	95.0	0.1	-1.34	0.76	0.80	1.44	3.8	0.003	0.66	0.0	0.04	18.01	0.00	2.467	8.88	3.14	6.0	94.0	0.0	-1.03	1.20	0.77	0.81	1.20	16948	2079	7	6	0	0	0	logfile
✔	8HWF	35056	2024-11-19	2022-12-29	3.3	3.50	3.27	3.4	0.003	0.66	0.0	0.04	17.29	0.00	2.039	8.34	0.15	4.7	95.3	0.0	-1.24	0.76	0.87	2.45	3.4	0.004	0.64	0.0	0.04	17.65	0.00	1.981	6.14	2.54	5.6	94.4	0.0	-0.34	0.34	0.75	0.87	2.40	18441	2251	13	6	9	0	0	logfile
✔	8HW2	35049	2024-11-16	2022-12-28	3.65	4.12	3.84	4.0	0.008	0.85	0.0	0.05	15.68	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.006	1.06	0.0	0.05	16.66	0.00	2.114	13.62	2.55	8.0	91.9	0.1	-1.71	1.13	0.68	0.80	1.07	10853	1375	2	0	2	0	0	logfile
✔	8HVT	35048	2024-11-16	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.002	0.66	0.0	0.04	15.87	0.00	2.027	7.60	0.96	4.2	95.8	0.0	2.05	0.39	0.59	0.86	2.06	10702	1366	8	0	12	0	0	logfile
✔	8FNF	29311	2024-11-18	2022-12-27	3.5	3.74	3.58	3.8	0.004	0.66	0.0	0.04	18.02	0.00	2.212	8.53	1.02	3.2	96.8	0.0	0.62	0.68	0.76	0.99	3.8	0.002	0.55	0.0	0.04	18.48	0.00	2.491	4.38	2.26	2.6	97.4	0.0	1.85	1.23	0.71	0.80	0.70	17080	2065	8	36	0	0	0	logfile
✔	8FNC	29308	2024-11-18	2022-12-27	3.3	3.36	3.23	3.3	0.003	0.55	0.0	0.04	17.65	0.00	2.191	6.51	0.90	2.3	97.7	0.0	0.86	0.75	0.84	2.25	3.3	0.002	0.49	0.0	0.04	17.92	0.00	2.502	4.10	1.47	1.9	98.1	0.0	1.69	0.40	0.77	0.87	2.17	17017	2065	8	33	0	0	0	logfile
✔	8FN0	29302	2024-11-15	2022-12-26	2.89	2.19	2.89	2.1	0.005	0.95	0.0	0.16	11.79	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.004	0.64	0.0	0.04	15.42	0.00	2.484	5.40	1.93	2.2	97.8	0.0	1.55	0.52	0.78	0.80	3.02	8502	1120	7	0	1	0	0	logfile
✔	8FN4	29305	2024-11-20	2022-12-26	3.7	3.85	3.80	3.8	0.003	0.55	0.0	0.04	13.16	0.00	2.208	11.82	0.80	6.3	93.7	0.0	-0.53	0.76	0.77	1.39	3.8	0.004	0.66	0.0	0.04	15.56	0.00	2.518	9.50	2.64	7.0	93.0	0.0	-0.01	1.13	0.77	0.78	0.96	20638	2625	6	0	0	0	0	logfile
✔	8FMY	29300	2024-11-15	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.034	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.003	0.59	0.0	0.04	14.13	0.00	2.646	1.24	0.46	3.4	96.6	0.0	0.97	1.10	0.83	0.83	3.58	9597	1260	3	0	0	0	0	logfile
✔	8HVi	35044	2024-11-15	2022-12-26	3.04	4.28	3.02	3.2	0.005	0.92	0.0	0.05	15.48	0.01	2.255	9.87	0.62	3.8	96.1	0.1	-1.79	0.79	0.80	4.09	3.2	0.002	0.55	0.0	0.04	15.62	0.00	2.493	7.34	1.95	2.9	97.1	0.0	0.05	0.29	0.88	0.92	3.92	8988	1148	6	0	1	0	0	logfile
✔	8FN1	29303	2024-11-15	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.56	0.0	0.04	13.34	0.00	2.505	5.92	2.04	2.8	97.2	0.0	1.59	0.47	0.78	0.80	3.63	8444	1116	6	0	0	0	0	logfile
✔	8FMZ	29301	2024-11-15	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.58	0.0	0.04	14.27	0.00	2.545	4.03	1.81	2.1	97.9	0.0	1.55	1.08	0.67	0.86	3.89	8768	1126	6	0	0	0	0	logfile
✔	8FMX	29299	2024-11-16	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.14	0.00	2.512	3.70	0.35	2.6	97.4	0.0	0.98	1.23	0.88	0.87	2.29	10329	1335	9	0	12	0	0	logfile
✔	8HUJ	35041	2024-11-14	2022-12-24	3.76	2.84	3.69	2.7	0.005	0.83	0.0	0.06	22.48	0.00	2.203	13.57	2.51	3.2	96.8	0.0	-0.39	0.74	0.78	1.43	2.7	0.005	0.67	0.0	0.04	21.98	0.00	2.475	11.85	5.21	3.2	96.8	0.0	0.32	0.48	0.74	0.79	0.98	7143	621	4	99	3	1	0	logfile
✔	8FMV	29297	2024-11-20	2022-12-24	3.34	2.46	—	1.9	0.007	0.86	0.0	0.04	19.29	0.01	2.200	6.02	0.10	6.1	93.9	0.0	0.37	0.80	0.82	2.31	1.9	0.003	0.50	0.0	0.04	17.57	0.00	1.860	7.80	1.53	5.4	94.5	0.1	0.80	0.93	0.80	0.83	2.24	20441	1234	4	0	25	0	9940	logfile
✔	8FLT	29286	2024-11-15	2022-12-22	3.03	3.20	2.98	3.3	0.004	0.67	0.0	0.04	13.48	0.00	2.194	7.65	0.12	2.4	97.6	0.0	0.67	0.67	0.75	3.93	3.3	0.004	0.59	0.0	0.04	15.11	0.00	2.388	7.02	1.77	2.8	97.2	0.0	1.03	0.93	0.64	0.81	3.02	8086	1031	6	0	0	0	0	logfile
✔	8FLR	29284	2024-11-15	2022-12-22	2.94	3.07	2.85	3.2	0.003	0.59	0.0	0.04	13.80	0.00	2.201	7.84	0.11	3.0	97.0	0.0	1.23	0.65	0.73	4.03	3.2	0.003	0.55	0.0	0.04	15.62	0.00	2.493	5.55	1.74	2.5	97.5	0.0	1.86	0.94	0.65	0.82	3.26	8928	1147	9	0	0	10	0	logfile
✔	8FLU	29287	2024-11-15	2022-12-22	2.76	3.00	2.82	3.1	0.004	0.70	0.0	0.05	13.28	0.00	2.223	12.74	0.35	3.0	96.9	0.1	0.56	0.64	0.74	3.48	3.1	0.005	0.66	0.0	0.04	15.93	0.00	2.516	10.91	2.20	3.0	97.0	0.0	0.97	0.98	0.64	0.78	2.89	8725	1141	9	0	0	5	0	logfile
✔	8FLQ	29283	2024-11-15	2022-12-22	2.55	2.78	2.65	2.8	0.003	0.57	0.0	0.04	13.87	0.00	2.209	7.54	0.21	2.1	97.9	0.0	1.35	0.64	0.70	3.93	2.9	0.005	0.61	0.0	0.04	15.98	0.00	2.542	7.31	0.64	2.8	97.2	0.0	1.36	0.33	0.64	0.83	3.35	8992	1146	9	0	0	14	0	logfile
✔	8C2H	16390	2024-11-16	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	17.61	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.003	0.53	0.0	0.04	15.44	0.00	2.521	3.50	2.68	0.8	99.2	0.0	3.71	0.51	0.64	0.88	4.31	10071	1238	24	0	12	86	0	logfile

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