Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FLR	29284	2024-11-15	2022-12-22	2.94	3.07	2.85	3.2	0.003	0.59	0.0	0.04	13.80	0.00	2.201	7.84	0.11	3.0	97.0	0.0	1.23	0.65	0.73	4.03	3.2	0.003	0.55	0.0	0.04	15.62	0.00	2.493	5.55	1.74	2.5	97.5	0.0	1.86	0.94	0.65	0.82	3.26	8928	1147	9	0	0	10	0	logfile
✔	8C2H	16390	2024-11-16	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	17.61	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.003	0.53	0.0	0.04	15.44	0.00	2.521	3.50	2.68	0.8	99.2	0.0	3.71	0.51	0.64	0.88	4.31	10071	1238	24	0	12	86	0	logfile
✔	8C20	16386	2024-11-16	2022-12-21	3.5	4.44	3.33	3.9	0.004	0.63	1.0	0.04	15.26	0.00	2.203	6.69	0.53	4.6	95.1	0.3	0.53	0.64	0.67	1.71	4.0	0.002	0.56	0.0	0.04	16.04	0.00	2.340	50.48	3.42	3.5	96.5	0.0	1.73	2.51	0.66	0.80	1.94	11908	1408	6	0	2	0	207	logfile
✔	8FLi	29279	2024-11-20	2022-12-21	3.8	4.18	4.01	3.9	0.005	0.68	0.0	0.04	26.20	0.01	1.508	15.79	0.26	16.4	82.9	0.7	-3.70	0.81	0.83	2.14	3.9	0.004	0.63	0.0	0.03	25.53	0.01	1.864	9.18	3.06	15.8	83.6	0.7	-2.68	1.20	0.82	0.83	1.87	21511	458	3	828	3	0	0	logfile
✔	8FL1	29264	2024-11-18	2022-12-21	3.75	3.87	3.78	3.9	0.005	0.68	0.0	0.05	16.10	0.00	2.259	3.93	0.00	2.5	97.5	0.0	0.22	0.77	0.79	2.27	3.9	0.003	0.65	0.0	0.05	14.86	0.00	2.289	5.01	2.83	3.8	96.2	0.0	0.24	1.30	0.79	0.82	1.83	16951	1972	37	0	108	0	0	logfile
✔	8C1S	16382	2024-11-16	2022-12-21	3.0	2.82	2.84	3.1	0.012	1.29	0.0	0.08	17.43	0.03	2.234	5.50	1.87	6.0	93.9	0.1	1.35	0.61	0.86	4.05	3.1	0.003	0.57	0.0	0.04	16.52	0.00	2.487	3.91	2.05	3.9	96.1	0.0	3.33	1.31	0.66	0.89	3.33	10668	1318	21	0	14	8	0	logfile
✔	8C1Q	16380	2024-11-19	2022-12-21	2.82	2.61	2.76	2.8	0.010	1.40	1.0	0.08	16.04	0.01	2.171	4.38	2.54	2.7	97.3	0.0	-0.72	0.64	0.82	3.35	2.8	0.004	0.60	0.0	0.04	16.51	0.00	2.472	5.52	2.38	1.9	98.1	0.0	1.63	0.54	0.70	0.82	2.70	18462	2315	23	0	18	25	0	logfile
✔	8C1Z	16385	2024-11-16	2022-12-21	3.8	4.18	3.40	3.8	0.003	0.55	0.0	0.04	15.09	0.00	1.892	7.89	0.22	5.0	94.6	0.4	-0.33	0.67	0.69	2.16	3.8	0.003	0.65	0.0	0.04	15.80	0.00	2.460	7.85	1.79	4.7	95.1	0.1	0.88	1.96	0.71	0.84	2.27	11863	1433	4	0	0	0	0	logfile
✔	8C1R	16381	2024-11-19	2022-12-21	3.2	2.92	3.03	3.1	0.011	1.15	0.0	0.07	17.11	0.01	2.068	7.15	3.23	4.7	95.2	0.1	0.17	0.61	0.84	3.26	3.1	0.005	0.61	0.0	0.04	16.10	0.00	2.496	6.22	2.41	3.8	96.2	0.0	1.24	0.92	0.70	0.89	2.75	18333	2331	19	0	20	6	0	logfile
✔	8HTi	35010	2024-11-14	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.002	0.52	0.0	0.04	16.39	0.00	2.569	3.63	2.36	2.3	97.7	0.0	1.07	0.39	0.78	0.84	2.10	7390	962	6	0	1	0	0	logfile
✔	8C1B	16377	2024-11-17	2022-12-20	3.8	4.32	3.79	3.9	0.007	1.31	2.0	0.07	16.55	0.01	2.045	3.20	0.28	4.2	95.5	0.2	-0.06	0.76	0.70	0.87	3.9	0.004	0.64	0.0	0.04	14.12	0.00	2.327	8.12	0.97	4.9	95.1	0.0	0.58	0.59	0.78	0.73	1.23	12675	807	7	0	16	0	6106	logfile
✔	8C1C	16378	2024-11-19	2022-12-20	4.1	5.17	4.18	4.0	0.008	1.21	1.0	0.06	14.93	0.01	2.072	2.46	0.00	3.2	96.7	0.2	-0.23	0.87	0.71	—	4.0	0.003	0.63	0.0	0.04	12.59	0.00	2.375	7.94	0.00	6.0	94.0	0.0	-0.06	1.16	0.88	0.75	—	19267	1237	13	0	28	0	9284	logfile
✔	8FK0	29247	2024-11-17	2022-12-20	4.0	4.01	3.66	3.9	0.003	0.56	0.0	0.04	11.08	0.00	2.069	9.71	0.14	2.6	97.4	0.0	0.90	0.47	0.82	—	3.9	0.003	0.81	1.0	0.04	13.40	0.00	2.307	7.57	2.08	2.8	97.2	0.0	1.13	1.16	0.47	0.82	—	12628	1848	14	0	0	0	0	logfile
✔	8FK7	29249	2024-11-19	2022-12-20	4.3	4.38	4.11	4.2	0.003	0.56	0.0	0.05	11.64	0.00	2.156	10.45	0.00	0.7	99.3	0.0	2.48	0.56	0.82	—	4.2	0.004	0.63	0.0	0.05	12.49	0.00	2.508	9.22	0.05	0.9	99.1	0.0	2.18	0.54	0.57	0.83	—	19740	2720	20	0	0	0	0	logfile
✔	8FK5	29248	2024-11-18	2022-12-20	3.4	2.99	3.40	3.5	0.005	0.72	1.0	0.06	15.60	0.00	2.052	3.66	0.12	3.0	97.0	0.0	0.37	0.72	0.76	2.57	3.5	0.004	0.69	0.0	0.05	14.58	0.00	2.452	4.28	3.70	3.9	96.1	0.0	-0.17	0.66	0.77	0.83	2.78	16980	1970	37	0	112	0	0	logfile
✔	8HSJ	34999	2024-11-18	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.8	0.004	0.81	0.0	0.04	16.75	0.01	1.551	19.36	3.23	4.1	95.5	0.4	-0.58	1.31	0.85	0.72	0.02	17244	2166	12	0	18	0	0	logfile
✔	8HSC	34993	2024-11-16	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.004	0.62	0.0	0.04	18.35	0.00	2.499	9.38	4.39	5.8	94.2	0.0	-0.68	0.32	0.63	0.82	1.89	10180	1345	7	0	0	0	0	logfile
✔	8FJA	29220	2024-11-14	2022-12-19	3.0	3.44	2.98	3.3	0.007	0.82	0.0	0.05	12.62	0.01	2.220	6.93	0.00	5.8	94.2	0.0	-2.60	0.71	0.89	4.79	3.3	0.003	0.57	0.0	0.04	15.57	0.00	2.527	3.59	1.00	3.0	97.0	0.0	-0.13	0.94	0.71	0.90	4.30	6419	812	5	0	0	0	0	logfile
✔	8HSi	34998	2024-11-14	2022-12-19	3.1	3.78	3.14	3.6	0.005	0.85	1.0	0.05	19.62	0.00	2.299	14.97	0.00	5.5	94.5	0.0	0.27	0.64	0.80	2.26	3.6	0.003	0.59	0.0	0.04	14.33	0.00	2.536	5.46	2.23	6.5	93.5	0.0	1.56	0.43	0.65	0.84	1.87	3516	405	5	0	10	0	0	logfile
✔	8FJB	29221	2024-11-14	2022-12-19	3.06	3.49	3.03	3.4	0.006	0.68	0.0	0.05	13.23	0.01	2.135	3.71	0.00	2.7	97.2	0.1	-1.47	0.70	0.89	5.11	3.4	0.004	0.58	0.0	0.04	14.71	0.00	2.523	2.42	0.58	2.5	97.5	0.0	1.10	0.91	0.74	0.92	4.44	6330	802	5	0	0	0	0	logfile

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