Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRU	34980	2024-11-14	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.0	0.003	0.82	0.0	0.05	17.69	0.00	2.520	15.24	3.23	4.2	95.8	0.0	-0.34	0.69	0.75	0.69	0.45	4870	597	1	0	0	0	0	logfile
✔	8HRA	34965	2024-11-18	2022-12-15	3.76	3.86	3.86	3.8	0.003	0.50	0.0	0.04	15.37	0.00	2.207	6.03	0.02	4.4	95.6	0.0	-0.18	0.77	0.85	1.80	3.8	0.005	0.73	3.0	0.04	16.76	0.00	2.195	6.92	1.48	5.3	94.7	0.1	0.43	1.13	0.77	0.85	1.46	48146	5885	14	51	4	0	0	logfile
✔	8FHT	29103	2024-11-14	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.52	0.0	0.04	14.26	0.00	2.293	5.64	2.07	2.0	98.0	0.0	2.47	0.40	0.57	0.80	1.90	7006	936	4	0	4	0	0	logfile
✔	8C03	16354	2024-11-14	2022-12-15	3.89	4.09	3.71	4.1	0.006	0.67	0.0	0.04	13.12	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.72	0.0	0.04	16.34	0.00	2.561	14.37	4.46	1.4	98.6	0.0	2.69	1.49	0.56	0.78	1.33	3330	429	2	0	1	0	0	logfile
✔	8HRN	34979	2024-11-14	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.003	0.74	0.0	0.04	17.91	0.00	2.559	13.46	3.61	2.9	97.1	0.0	-0.20	1.18	0.76	0.69	0.49	4870	597	1	0	0	0	0	logfile
✔	8BYP	16330	2024-11-19	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.004	0.61	0.0	0.05	16.21	0.00	2.439	8.31	2.00	6.7	93.3	0.0	-0.56	1.10	0.70	0.82	3.03	19836	2421	2	0	0	0	0	logfile
✔	8HRK	34976	2024-11-14	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.002	0.56	0.0	0.04	17.45	0.00	2.571	2.80	2.31	3.2	96.8	0.0	-0.73	1.70	0.67	0.80	2.18	6412	791	2	0	0	0	0	logfile
✔	8BZo	16344	2024-11-14	2022-12-15	3.5	3.72	3.51	3.7	0.005	0.73	1.0	0.05	16.41	0.01	2.231	13.28	0.99	5.6	94.2	0.2	-1.51	0.64	0.75	1.73	3.7	0.004	0.63	0.0	0.04	16.94	0.00	2.509	8.26	3.77	4.8	95.2	0.0	-0.41	0.33	0.62	0.74	1.57	4834	614	3	0	0	0	0	logfile
✔	8BZY	16345	2024-11-14	2022-12-15	3.24	3.52	3.23	3.6	0.005	0.55	0.0	0.04	12.93	0.00	2.297	6.68	2.42	2.4	97.6	0.0	2.10	0.48	0.78	2.48	3.6	0.003	0.48	0.0	0.04	13.85	0.00	2.617	5.99	2.64	2.8	97.2	0.0	2.90	0.71	0.47	0.78	2.22	4311	549	3	0	2	0	0	logfile
✔	8HRL	34977	2024-11-14	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	3.1	0.002	0.57	0.0	0.04	18.36	0.00	2.592	3.52	2.02	2.8	97.2	0.0	0.04	0.49	0.61	0.72	1.41	6412	791	2	0	0	0	0	logfile
✔	8C02	16353	2024-11-14	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.77	0.0	0.04	13.28	0.00	2.453	12.97	0.00	4.1	95.9	0.0	1.73	1.50	0.59	0.78	—	4242	549	2	0	0	0	0	logfile
✔	8HRM	34978	2024-11-14	2022-12-15	2.56	2.74	2.64	3.1	0.005	0.82	0.0	0.05	15.72	0.00	2.138	18.48	4.07	6.0	93.2	0.9	-1.82	0.70	0.79	4.89	3.1	0.007	0.88	0.0	0.05	15.88	0.00	2.555	9.46	4.36	4.9	95.1	0.0	-1.98	0.77	0.69	0.79	4.98	3567	476	8	0	0	19	0	logfile
✔	8FHH	29085	2024-11-19	2022-12-14	3.09	3.34	3.16	3.3	0.006	0.83	0.0	0.05	12.51	0.01	2.292	4.45	0.19	1.8	98.2	0.0	-2.13	0.68	0.90	3.44	3.3	0.003	0.50	0.0	0.04	14.99	0.00	2.519	4.70	1.57	1.2	98.8	0.0	1.89	0.51	0.65	0.89	3.02	19824	2424	8	0	12	0	0	logfile
✔	8HQY	34954	2024-11-18	2022-12-14	3.05	3.63	2.80	2.2	0.011	1.01	0.0	0.06	27.35	0.01	2.238	4.33	0.14	5.8	94.2	0.0	-3.02	0.92	0.86	2.67	2.2	0.004	0.68	0.0	0.04	27.56	0.00	2.082	10.40	1.27	5.0	95.0	0.0	1.44	1.25	0.93	0.88	2.18	12302	848	12	272	0	0	0	logfile
✔	8BYV	16334	2024-11-19	2022-12-14	2.89	3.45	3.02	2.9	0.003	0.57	0.0	0.04	22.87	0.00	2.158	15.00	0.88	4.2	95.8	0.0	-1.29	0.85	0.80	0.84	2.9	0.007	0.75	0.0	0.04	22.66	0.01	2.083	15.06	4.21	7.5	92.5	0.0	-1.24	1.08	0.85	0.83	1.25	51866	2391	21	1533	0	0	0	logfile
✔	8HR5	34958	2024-11-15	2022-12-14	3.73	4.01	3.70	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.61	0.0	0.04	22.85	0.00	2.288	7.00	4.33	4.1	95.9	0.0	1.46	1.29	0.70	0.73	0.95	7595	711	5	123	0	0	0	logfile
✔	8HR1	34956	2024-11-16	2022-12-14	3.02	2.38	2.94	3.0	0.010	0.80	0.0	0.05	26.09	0.01	2.255	8.44	0.16	3.1	96.9	0.0	-5.09	0.84	0.81	2.82	2.9	0.004	0.59	0.0	0.03	28.08	0.00	2.098	8.16	2.03	2.7	97.3	0.0	1.81	1.26	0.89	0.89	2.20	12110	765	11	294	0	0	0	logfile
✔	8FHK	29087	2024-11-20	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8HQN	34951	2024-11-15	2022-12-13	3.0	3.94	2.96	3.4	0.006	1.05	0.0	0.06	15.25	0.01	2.253	8.80	0.54	4.4	95.6	0.0	-1.62	0.75	0.78	3.18	3.4	0.002	0.59	0.0	0.04	15.83	0.00	2.419	7.86	1.30	3.3	96.6	0.1	0.06	0.41	0.77	0.83	3.11	8605	1107	6	0	1	0	0	logfile
✔	8HPU	34944	2024-11-16	2022-12-13	2.56	2.71	3.21	2.6	0.003	0.69	0.0	0.05	13.60	0.01	2.215	10.12	0.11	5.0	95.0	0.0	-0.21	0.72	0.75	3.07	2.6	0.004	0.72	0.0	0.05	16.23	0.01	2.315	8.83	1.61	4.9	95.1	0.0	0.00	0.93	0.74	0.78	3.03	8281	1080	6	0	1	0	0	logfile

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