Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HQM	34950	2024-11-15	2022-12-13	2.95	4.20	3.00	3.1	0.005	0.90	0.0	0.05	16.06	0.01	2.241	10.27	0.43	5.0	95.0	0.0	-1.84	0.81	0.84	3.87	3.1	0.004	0.61	0.0	0.04	16.54	0.00	2.573	10.63	1.29	3.6	96.4	0.0	-0.58	0.28	0.87	0.92	3.41	8618	1104	6	0	1	0	0	logfile
✔	8HQE	34948	2024-11-15	2022-12-13	2.97	4.06	2.99	3.1	0.004	0.83	0.0	0.05	15.69	0.01	2.202	9.02	0.31	4.6	95.4	0.0	-1.77	0.75	0.80	3.13	3.2	0.003	0.64	0.0	0.04	16.21	0.00	2.463	8.68	1.15	3.8	96.2	0.0	-0.10	0.36	0.84	0.91	2.99	8903	1147	5	0	0	0	0	logfile
✔	8HQC	34947	2024-11-15	2022-12-13	3.89	4.15	3.91	4.1	0.003	0.69	0.0	0.04	11.77	0.01	2.223	6.60	0.12	4.1	95.9	0.0	0.00	0.73	0.80	2.24	4.1	0.004	0.74	0.0	0.04	14.75	0.00	2.438	7.08	3.38	4.4	95.6	0.0	0.03	1.05	0.74	0.82	1.86	8538	1186	6	0	0	0	0	logfile
✔	8HQN	34951	2024-11-15	2022-12-13	3.0	3.94	2.96	3.4	0.006	1.05	0.0	0.06	15.25	0.01	2.253	8.80	0.54	4.4	95.6	0.0	-1.62	0.75	0.78	3.18	3.4	0.002	0.59	0.0	0.04	15.83	0.00	2.419	7.86	1.30	3.3	96.6	0.1	0.06	0.41	0.77	0.83	3.11	8605	1107	6	0	1	0	0	logfile
✔	8BYL	16327	2024-11-14	2022-12-13	3.5	3.68	3.45	3.7	0.004	0.66	0.0	0.05	16.83	0.00	2.304	9.11	1.05	4.8	95.2	0.0	-1.39	0.61	0.77	1.24	3.7	0.003	0.64	0.0	0.04	17.11	0.00	2.526	7.24	4.63	4.5	95.5	0.0	-1.22	0.35	0.61	0.75	1.34	4378	571	4	0	0	0	0	logfile
✔	8HPT	34943	2024-11-15	2022-12-13	3.39	3.64	3.38	3.7	0.003	0.60	0.0	0.04	14.89	0.01	2.212	6.51	0.40	3.4	96.6	0.0	0.29	0.72	0.81	2.10	3.7	0.004	0.63	0.0	0.04	15.82	0.00	2.565	5.00	4.28	4.7	95.3	0.0	0.48	0.37	0.73	0.83	2.36	7897	1094	7	0	1	0	0	logfile
✔	8BYi	16326	2024-11-17	2022-12-13	4.1	3.68	3.94	4.0	0.009	0.72	0.0	0.21	12.07	0.00	2.132	24.08	0.00	2.3	97.7	0.0	1.89	0.61	0.78	—	3.7	0.003	0.62	0.0	0.04	11.65	0.00	2.395	11.69	0.00	2.8	97.2	0.0	-0.33	1.13	0.63	0.80	—	13031	1600	15	0	12	9	0	logfile
✔	8BYN	16329	2024-11-14	2022-12-13	2.6	2.60	2.45	2.5	0.009	0.79	0.0	0.05	15.40	0.00	2.417	6.44	0.00	1.4	98.6	0.0	-1.93	0.45	0.92	7.24	2.5	0.005	0.58	0.0	0.05	18.63	0.00	2.614	3.08	1.01	1.4	98.6	0.0	-1.91	0.41	0.43	0.93	6.51	3564	450	10	0	6	0	0	logfile
✔	8HPM	34933	2024-11-17	2022-12-12	3.82	4.17	3.97	4.0	0.012	1.82	5.0	0.10	12.98	0.01	2.225	7.78	0.65	6.4	93.5	0.1	-2.52	0.67	0.78	1.71	4.0	0.003	0.79	0.0	0.04	14.95	0.00	2.385	11.35	2.44	4.1	95.9	0.0	-0.55	1.20	0.67	0.79	1.77	12803	1758	8	0	4	0	0	logfile
✔	8HPN	34934	2024-11-17	2022-12-12	4.55	5.06	4.53	6.7	0.012	1.81	6.0	0.10	13.61	0.01	2.243	7.50	0.35	7.3	92.5	0.2	-2.64	0.72	0.80	—	6.8	0.003	0.73	0.0	0.04	12.56	0.00	2.442	8.67	0.00	3.7	96.3	0.1	0.08	0.86	0.72	0.80	—	12329	1707	8	0	4	0	0	logfile
✔	8HPQ	34940	2024-11-19	2022-12-12	2.85	3.02	2.88	2.9	0.013	1.12	10.0	0.06	13.79	0.01	1.403	9.85	0.64	3.8	96.2	0.1	-0.06	0.52	0.38	1.59	2.9	0.003	0.66	0.0	0.04	15.81	0.00	2.401	8.99	1.32	3.3	96.7	0.0	-0.05	1.21	0.71	0.77	2.16	44355	5745	18	0	3	0	0	logfile
✔	8BYA	16325	2024-11-15	2022-12-12	3.38	3.67	3.49	3.7	0.005	0.80	0.0	0.05	15.66	0.00	1.446	13.76	0.88	5.0	94.9	0.1	-1.67	0.69	0.73	1.25	3.7	0.003	0.69	0.0	0.04	16.34	0.00	2.395	8.47	3.51	5.0	95.0	0.0	-1.25	0.42	0.70	0.75	1.19	8389	1145	7	0	0	0	0	logfile
✔	8HPS	34942	2024-11-17	2022-12-12	3.51	3.85	3.72	3.8	0.012	1.77	6.0	0.10	13.07	0.01	2.209	4.87	0.38	3.9	96.1	0.0	-1.71	0.65	0.81	2.79	3.8	0.003	0.70	0.0	0.04	15.39	0.00	2.040	8.35	2.68	2.5	97.5	0.0	0.90	1.10	0.65	0.82	1.39	12984	1722	8	0	6	0	0	logfile
✔	8HPR	34941	2024-11-17	2022-12-12	3.75	4.12	3.94	4.0	0.012	1.78	1.0	0.10	13.56	0.01	2.201	7.88	0.64	5.4	94.5	0.1	-2.19	0.67	0.78	1.77	4.0	0.004	0.94	1.0	0.05	14.82	0.00	2.073	11.04	2.24	3.4	96.5	0.1	0.14	0.86	0.68	0.79	1.65	12645	1696	8	0	6	0	0	logfile
✔	8HPF	34931	2024-11-16	2022-12-12	2.34	2.45	2.94	2.4	0.003	0.68	0.0	0.04	17.78	0.01	2.244	10.57	7.09	5.0	95.0	0.0	-0.06	0.71	0.75	2.92	2.4	0.003	0.70	0.0	0.05	17.41	0.01	2.453	9.64	4.19	4.8	95.2	0.0	-0.16	0.32	0.73	0.79	2.58	8268	1079	6	0	1	0	0	logfile
✔	8HPL	34932	2024-11-16	2022-12-12	4.29	4.66	4.34	4.3	0.012	1.78	1.0	0.09	12.90	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.3	0.003	0.70	0.0	0.04	12.20	0.00	2.461	7.88	0.00	4.2	95.8	0.0	-0.17	0.79	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	8HoY	34927	2024-11-17	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.004	0.73	0.0	0.05	16.62	0.01	2.380	12.85	3.74	9.4	90.5	0.1	-1.75	0.79	0.55	0.62	0.94	13454	1650	3	0	0	0	0	logfile
✔	8BY2	16319	2024-11-19	2022-12-11	3.18	3.61	3.24	3.6	0.003	0.54	0.0	0.03	19.61	0.00	2.211	4.78	0.00	5.0	95.0	0.0	1.83	0.62	0.83	0.69	3.6	0.004	0.57	0.0	0.04	18.87	0.00	2.253	4.56	1.95	5.6	94.4	0.0	1.42	0.89	0.59	0.82	0.73	17356	1094	4	0	8	0	8802	logfile
✔	8FFY	29070	2024-11-15	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	19.05	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.003	0.57	0.0	0.04	19.83	0.00	2.574	6.99	3.24	2.6	97.4	0.0	0.35	0.80	0.74	0.80	1.51	7442	770	5	61	2	0	0	logfile
✔	8Ho7	34921	2024-11-17	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.56	0.0	0.05	17.88	0.00	2.562	3.62	2.16	3.8	96.2	0.0	0.35	0.18	0.64	0.88	5.13	13227	1620	4	0	0	112	0	logfile

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