Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Ho9	34923	2024-11-17	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.003	0.58	0.0	0.05	17.42	0.00	2.576	2.18	2.02	3.6	96.4	0.0	0.46	0.19	0.75	0.89	5.38	13463	1622	4	0	0	347	0	logfile
✔	8Ho7	34921	2024-11-17	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.56	0.0	0.05	17.88	0.00	2.562	3.62	2.16	3.8	96.2	0.0	0.35	0.18	0.64	0.88	5.13	13227	1620	4	0	0	112	0	logfile
✔	8HoB	34924	2024-11-17	2022-12-09	2.19	2.69	2.23	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.003	0.52	0.0	0.05	17.29	0.00	2.561	2.96	1.08	3.0	97.0	0.0	0.78	0.16	0.73	0.89	5.59	13449	1622	4	0	0	333	0	logfile
✔	8Ho8	34922	2024-11-17	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.5	0.003	0.58	0.0	0.05	17.29	0.00	2.531	2.33	1.95	3.5	96.5	0.0	0.54	0.15	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8HNU	34918	2024-11-18	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.004	0.91	2.0	0.04	16.20	0.00	2.142	2.41	0.58	2.2	97.7	0.1	0.91	0.16	0.85	0.91	4.82	16178	1970	6	0	4	316	0	logfile
✔	8HNM	34916	2024-11-15	2022-12-08	2.94	3.31	2.90	3.2	0.003	0.60	0.0	0.04	15.74	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.003	0.63	0.0	0.04	16.38	0.00	2.535	4.90	2.65	5.1	94.9	0.0	0.47	0.34	0.77	0.88	2.07	8784	1117	6	0	3	0	0	logfile
✔	8HNN	34917	2024-11-14	2022-12-08	3.6	3.86	3.60	3.8	0.004	0.69	0.0	0.19	17.32	0.00	2.206	7.32	0.00	6.2	93.8	0.0	0.62	0.53	0.77	1.74	3.8	0.003	0.69	0.0	0.04	16.91	0.00	2.568	6.18	3.85	5.2	94.8	0.0	1.00	0.52	0.56	0.80	0.97	3063	392	3	0	2	0	0	logfile
✔	8BX7	16311	2024-11-18	2022-12-08	2.76	3.44	2.81	3.3	0.003	0.66	0.0	0.04	15.28	0.00	2.209	10.59	1.92	5.3	94.6	0.0	0.66	0.72	0.77	2.03	3.3	0.003	0.60	0.0	0.04	16.05	0.00	2.419	7.71	2.50	4.8	95.1	0.0	1.48	0.29	0.70	0.76	1.72	15637	2059	5	0	0	0	0	logfile
✔	8BXG	16318	2024-11-18	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.54	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.003	0.55	0.0	0.03	19.08	0.00	2.226	3.55	1.61	7.1	92.9	0.0	1.26	0.19	0.66	0.81	1.98	17301	1093	4	0	6	0	8796	logfile
✔	8BXB	16314	2024-11-17	2022-12-08	3.9	4.23	3.84	4.2	0.004	0.78	0.0	0.05	13.50	0.01	2.256	7.26	5.55	3.9	96.1	0.1	-2.59	0.68	0.77	1.32	4.1	0.003	0.68	0.0	0.04	14.56	0.00	2.484	10.00	3.57	4.7	95.3	0.0	-0.83	0.86	0.66	0.80	1.29	12547	1630	14	0	5	4	0	logfile
✔	8HNV	34919	2024-11-15	2022-12-08	3.1	2.71	3.05	2.9	0.002	0.57	0.0	0.04	20.86	0.00	2.103	11.63	0.00	4.3	95.7	0.0	-0.35	0.57	0.66	1.19	2.9	0.004	0.63	0.0	0.04	21.80	0.00	2.536	10.87	2.65	6.4	93.6	0.0	-0.36	1.54	0.60	0.72	1.05	9196	832	5	128	0	0	0	logfile
✔	8BXE	16316	2024-11-17	2022-12-08	3.9	4.10	3.90	4.1	0.003	0.72	0.0	0.05	12.69	0.00	2.220	12.46	0.00	4.6	95.4	0.0	-1.05	0.64	0.79	1.63	4.1	0.003	0.79	0.0	0.05	15.74	0.00	2.251	11.37	3.01	4.7	95.3	0.0	-0.67	0.49	0.64	0.80	1.07	12550	1630	14	0	5	4	0	logfile
✔	8HNK	34914	2024-11-15	2022-12-08	3.01	3.38	2.91	3.2	0.004	0.61	0.0	0.04	13.49	0.00	2.176	8.10	0.00	4.3	95.7	0.0	0.15	0.80	0.87	3.03	3.2	0.004	1.04	2.0	0.05	15.26	0.01	2.110	4.84	1.46	3.9	96.0	0.1	0.75	0.94	0.81	0.90	2.87	9492	1210	7	0	2	0	0	logfile
✔	8FF4	29039	2024-11-19	2022-12-07	3.6	3.84	—	3.5	0.003	0.64	0.0	0.04	19.46	0.00	1.983	15.63	0.71	5.8	93.6	0.6	0.08	0.87	0.80	1.80	3.5	0.003	0.60	0.0	0.04	19.42	0.00	1.932	10.26	2.42	5.3	94.4	0.3	0.61	0.46	0.89	0.83	1.69	50322	5652	30	200	14	0	0	logfile
✔	8BX5	16308	2024-11-17	2022-12-07	4.2	4.41	4.00	4.3	0.003	0.78	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	4.3	0.003	0.75	0.0	0.05	13.30	0.00	2.316	12.82	0.16	3.7	96.1	0.1	-0.49	2.12	0.63	0.76	—	12527	1630	13	0	4	4	0	logfile
✔	8HND	34911	2024-11-14	2022-12-07	3.19	3.62	3.32	3.6	0.008	1.22	4.0	0.07	14.37	0.02	2.231	14.77	0.65	4.5	95.5	0.0	-2.74	0.50	0.73	2.07	3.6	0.003	0.60	0.0	0.04	15.32	0.00	2.568	7.56	3.45	2.9	97.1	0.0	1.39	1.93	0.41	0.66	2.27	4370	560	3	0	4	0	0	logfile
✔	8FF3	29037	2024-11-13	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.51	0.0	0.06	11.60	0.00	2.568	4.58	0.00	0.7	99.3	0.0	-2.04	0.53	0.35	0.72	3.73	2190	150	6	0	0	0	1122	logfile
✔	8FF2	29036	2024-11-14	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.005	0.70	0.0	0.05	17.50	0.00	2.443	7.08	2.41	3.9	96.1	0.0	-2.83	2.42	0.52	0.82	6.11	5650	380	10	0	0	0	2740	logfile
✔	8BWo	16292	2024-11-15	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.005	0.66	0.0	0.04	16.43	0.00	1.892	7.08	2.28	2.1	97.9	0.0	0.90	1.80	0.68	0.86	2.46	9712	1211	2	0	4	0	0	logfile
✔	8BWR	16295	2024-11-15	2022-12-07	4.0	4.17	3.97	4.1	0.010	0.93	0.0	0.05	13.67	0.01	2.203	7.58	0.96	3.7	96.3	0.0	-1.63	0.65	0.78	—	4.1	0.003	0.72	0.0	0.04	16.20	0.00	2.576	11.40	2.59	2.4	97.6	0.0	1.52	1.91	0.70	0.80	—	9570	1195	2	0	1	0	0	logfile

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