Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FDG	29011	2024-11-16	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8HMC	34895	2024-11-20	2022-12-03	3.6	3.94	3.81	3.9	0.003	0.58	0.0	0.04	16.34	0.00	2.057	8.37	0.13	6.0	94.0	0.0	-0.07	0.72	0.75	1.46	3.9	0.005	0.64	0.0	0.04	17.43	0.00	2.325	7.06	2.88	8.0	91.9	0.1	-0.25	0.43	0.73	0.79	1.43	21797	2693	5	0	2	0	0	logfile
✔	8HM0	34887	2024-11-16	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.66	0.0	0.04	17.05	0.00	2.516	8.39	5.39	6.8	93.2	0.0	-1.49	0.46	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	8BUZ	16252	2024-11-16	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.4	0.003	0.61	0.0	0.04	17.64	0.00	1.953	10.02	3.33	4.9	95.1	0.0	0.98	1.41	0.73	0.77	1.17	9921	1223	4	0	3	0	0	logfile
✔	8FCW	28997	2024-11-18	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.67	0.0	0.04	19.94	0.00	1.871	9.94	2.03	2.6	97.0	0.4	1.28	1.33	0.87	0.85	1.70	15170	1715	12	60	10	0	0	logfile
✔	8HLP	34880	2024-11-19	2022-11-30	3.5	3.86	3.64	3.8	0.005	0.63	0.0	0.04	14.18	0.01	1.964	10.27	0.00	8.6	91.4	0.0	-0.88	0.63	0.79	2.14	3.8	0.003	0.67	0.0	0.04	16.07	0.00	2.352	8.34	2.13	5.3	94.7	0.0	-0.22	0.46	0.62	0.78	1.49	19067	2332	5	0	18	0	0	logfile
✔	8FAZ	28961	2024-11-14	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.0	0.004	0.71	0.0	0.04	15.43	0.00	1.946	12.27	1.87	2.9	97.1	0.0	0.43	2.04	0.83	0.82	2.63	7331	926	7	0	5	0	0	logfile
✔	8HLA	34859	2024-11-20	2022-11-29	2.81	2.68	2.73	2.8	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	2.9	0.004	0.68	0.0	0.05	17.40	0.00	2.406	12.91	3.06	5.3	94.6	0.1	-0.55	0.94	0.62	0.84	3.38	20868	2580	20	0	12	0	0	logfile
✔	8FAK	28959	2024-11-17	2022-11-28	3.22	3.32	3.44	3.4	0.002	0.46	0.0	0.04	19.10	0.00	1.988	8.55	0.00	2.3	97.7	0.0	1.43	0.69	0.74	2.43	3.4	0.004	0.57	0.0	0.04	20.04	0.00	2.270	4.08	0.99	5.8	94.2	0.0	-0.18	1.26	0.70	0.78	2.60	14963	837	7	57	2	0	7248	logfile
✔	8FAi	28957	2024-11-14	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.64	0.0	0.04	15.87	0.00	2.225	5.64	6.67	0.1	99.9	0.0	3.84	2.69	0.54	0.83	1.88	7845	1020	25	0	15	0	0	logfile
✔	8FA2	28948	2024-11-14	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	8FA1	28947	2024-11-14	2022-11-25	2.51	2.37	2.87	2.7	0.006	0.57	0.0	0.04	15.92	0.00	2.286	8.14	0.00	4.6	95.4	0.0	0.73	0.77	0.80	1.71	2.7	0.003	0.51	0.0	0.04	16.11	0.00	2.407	7.17	1.35	0.6	99.4	0.0	4.97	1.17	0.77	0.79	1.42	2553	339	6	0	0	0	0	logfile
✔	8HKE	34850	2024-11-16	2022-11-25	3.71	4.00	3.77	3.9	0.007	0.82	4.0	0.06	17.03	0.00	2.049	16.52	0.09	9.1	90.9	0.0	-5.00	0.65	0.80	2.65	3.9	0.003	0.64	0.0	0.04	17.63	0.00	2.197	10.16	3.30	5.0	95.0	0.0	-1.14	1.19	0.65	0.79	1.85	11854	1306	6	74	2	0	0	logfile
✔	8HK7	34848	2024-11-18	2022-11-25	3.0	3.70	3.51	3.9	0.009	0.75	0.0	0.04	16.92	0.00	1.579	11.81	0.53	8.6	91.2	0.2	-0.87	0.43	0.39	0.28	3.6	0.004	0.90	0.0	0.05	19.54	0.00	2.296	10.18	2.12	7.8	92.2	0.0	-0.85	2.07	0.60	0.78	1.63	15765	1872	8	0	17	0	0	logfile
✔	8HK2	34842	2024-11-16	2022-11-24	2.9	2.57	2.94	3.1	0.007	1.06	2.0	0.08	9.70	0.01	2.114	6.33	0.79	2.5	97.1	0.3	0.47	0.78	0.81	3.37	3.2	0.003	0.64	0.0	0.04	14.63	0.00	2.532	7.75	1.88	2.3	97.7	0.0	1.03	2.55	0.78	0.85	3.24	9548	1212	7	0	7	0	0	logfile
✔	8HJW	34840	2024-11-19	2022-11-24	4.1	4.34	4.18	4.2	0.003	0.70	0.0	0.04	13.47	0.00	2.134	13.05	0.47	2.2	97.5	0.3	0.71	0.80	0.70	—	4.2	0.003	0.68	0.0	0.04	13.46	0.00	2.388	11.32	0.00	2.7	97.3	0.0	0.57	1.24	0.83	0.77	—	18516	2430	2	0	0	0	0	logfile
✔	8HK5	34846	2024-11-14	2022-11-24	3.0	2.26	2.92	2.1	0.003	0.50	0.0	0.04	11.85	0.00	2.073	2.69	0.24	0.8	99.2	0.0	-0.35	0.74	0.74	2.80	2.0	0.004	0.64	0.0	0.04	15.62	0.00	2.461	7.80	2.56	1.7	98.3	0.0	1.00	0.54	0.77	0.80	3.10	7604	967	6	0	2	0	0	logfile
✔	8HK3	34843	2024-11-15	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.2	0.003	0.59	0.0	0.04	13.55	0.00	2.528	4.55	2.24	3.1	96.9	0.0	1.06	1.20	0.77	0.79	2.95	8746	1135	5	0	0	0	0	logfile
✔	8BRi	16215	2024-11-15	2022-11-23	3.9	4.18	3.97	4.1	0.005	1.30	2.0	0.07	16.37	0.01	1.969	24.91	1.15	2.8	97.2	0.0	2.08	0.70	0.79	1.45	4.1	0.004	0.97	0.0	0.05	17.45	0.00	2.446	17.47	4.13	2.2	97.8	0.0	1.07	0.55	0.71	0.80	0.83	9911	1312	7	0	0	0	0	logfile
✔	8BRD	16212	2024-11-15	2022-11-23	2.48	2.70	2.49	2.8	0.005	0.83	2.0	0.06	16.18	0.02	1.733	13.70	2.88	2.4	97.6	0.0	2.09	0.57	0.78	2.12	2.8	0.003	0.57	0.0	0.04	17.06	0.00	2.136	8.53	2.78	2.2	97.8	0.0	2.87	0.96	0.61	0.81	1.99	9929	1312	13	0	2	12	0	logfile

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