Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FEL	29032	2024-11-15	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.5	0.002	0.58	0.0	0.04	12.97	0.00	2.425	9.82	0.00	6.1	93.9	0.0	-0.77	2.75	0.75	0.46	—	9201	1191	3	0	0	0	0	logfile
✔	8HMY	34904	2024-11-16	2022-12-06	2.94	3.24	3.07	3.2	0.005	0.85	3.0	0.05	19.41	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.003	0.61	0.0	0.04	19.75	0.00	2.191	6.59	5.50	3.7	96.2	0.1	0.41	1.19	0.68	0.80	2.11	11675	1368	7	90	6	0	0	logfile
✔	8BW7	16280	2024-11-14	2022-12-06	3.53	4.04	3.62	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.61	0.0	0.04	18.06	0.00	2.534	9.11	4.52	3.1	96.9	0.0	0.94	0.27	0.57	0.72	1.45	4748	612	3	0	2	0	0	logfile
✔	8HN1	34906	2024-11-14	2022-12-06	2.9	3.16	2.84	3.1	0.003	0.58	0.0	0.04	12.06	0.00	1.991	8.56	0.00	4.0	96.0	0.0	-0.68	0.61	0.79	2.24	3.1	0.004	0.63	0.0	0.04	15.03	0.00	2.500	6.31	2.59	4.7	95.3	0.0	0.61	0.42	0.57	0.79	2.45	3560	456	3	0	0	0	0	logfile
✔	8FEX	29033	2024-11-14	2022-12-06	3.07	3.30	3.12	3.4	0.003	0.46	0.0	0.04	13.44	0.00	1.911	7.41	0.00	5.8	94.2	0.0	-0.93	0.60	0.73	2.45	3.4	0.003	0.53	0.0	0.04	15.69	0.00	2.483	6.72	2.13	5.6	94.2	0.1	-0.51	0.35	0.59	0.73	1.75	7302	891	2	0	0	0	0	logfile
✔	8BVR	16269	2024-11-14	2022-12-05	3.52	4.00	3.61	3.9	0.005	0.72	0.0	0.04	17.01	0.01	2.178	12.22	0.19	4.6	95.4	0.0	0.64	0.62	0.78	1.14	3.9	0.003	0.69	0.0	0.04	17.21	0.00	2.520	10.97	6.02	3.9	96.1	0.0	1.17	0.30	0.59	0.78	1.18	4806	617	3	0	3	0	0	logfile
✔	8HMP	34902	2024-11-15	2022-12-05	2.77	2.61	2.82	2.8	0.005	0.92	0.0	0.06	14.08	0.01	2.228	5.94	0.00	3.4	96.6	0.0	-0.73	0.63	0.79	3.64	2.7	0.003	0.69	0.0	0.04	16.83	0.00	2.424	8.92	2.76	4.0	96.0	0.0	0.41	0.43	0.62	0.82	3.42	8319	1045	6	0	1	0	0	logfile
✔	8HMV	34903	2024-11-15	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.51	0.0	0.04	15.55	0.00	2.548	3.28	1.35	2.4	97.6	0.0	0.81	0.38	0.65	0.87	3.55	8127	1022	5	0	0	0	0	logfile
✔	8FE1	29019	2024-11-18	2022-12-05	3.0	3.54	2.92	3.3	0.016	1.03	0.0	0.09	17.02	0.01	2.217	4.85	0.06	1.4	98.6	0.0	0.44	0.73	0.85	3.73	3.3	0.003	0.65	0.0	0.04	14.44	0.00	2.489	5.78	1.82	1.4	98.6	0.0	1.38	1.27	0.73	0.87	3.65	15445	1772	12	0	48	0	0	logfile
✔	8FDU	29014	2024-11-17	2022-12-04	3.3	3.75	3.30	3.6	0.005	0.83	0.0	0.05	13.46	0.00	2.212	12.19	0.21	4.1	95.9	0.1	-0.29	0.66	0.78	1.76	3.6	0.005	0.69	0.0	0.05	15.56	0.00	2.462	9.24	1.98	4.2	95.8	0.0	0.31	1.22	0.67	0.80	1.83	13193	1633	4	0	2	0	0	logfile
✔	8FDG	29011	2024-11-16	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8HMC	34895	2024-11-20	2022-12-03	3.6	3.94	3.81	3.9	0.003	0.58	0.0	0.04	16.34	0.00	2.057	8.37	0.13	6.0	94.0	0.0	-0.07	0.72	0.75	1.46	3.9	0.005	0.64	0.0	0.04	17.43	0.00	2.325	7.06	2.88	8.0	91.9	0.1	-0.25	0.43	0.73	0.79	1.43	21797	2693	5	0	2	0	0	logfile
✔	8HM0	34887	2024-11-16	2022-12-02	3.1	3.43	3.01	3.4	0.005	0.72	0.0	0.04	17.21	0.00	2.162	12.48	9.92	9.8	90.1	0.1	-4.58	0.76	0.80	2.15	3.4	0.003	0.66	0.0	0.04	17.05	0.00	2.516	8.39	5.39	6.8	93.2	0.0	-1.49	0.46	0.76	0.81	2.12	11331	1474	3	0	0	0	0	logfile
✔	8FD7	29004	2024-11-19	2022-12-02	3.1	3.01	—	3.2	0.005	0.58	0.0	0.11	12.34	0.00	2.223	7.54	2.76	6.1	93.7	0.1	-0.41	0.72	0.76	2.56	3.2	0.003	0.67	0.0	0.05	14.19	0.00	2.305	7.31	2.20	6.0	93.9	0.2	-0.24	0.48	0.76	0.83	2.18	19701	2416	6	0	20	3	0	logfile
✔	8FCW	28997	2024-11-18	2022-12-01	2.87	4.14	3.11	3.6	0.010	0.90	0.0	0.06	20.73	0.01	1.989	13.44	2.09	3.6	96.0	0.4	-0.40	0.85	0.80	1.84	3.6	0.003	0.67	0.0	0.04	19.94	0.00	1.871	9.94	2.03	2.6	97.0	0.4	1.28	1.33	0.87	0.85	1.70	15170	1715	12	60	10	0	0	logfile
✔	8BUZ	16252	2024-11-16	2022-12-01	3.5	3.43	3.54	3.4	0.003	0.62	0.0	0.04	17.23	0.00	1.915	11.78	0.46	4.8	95.2	0.0	0.41	0.74	0.76	1.17	3.4	0.003	0.61	0.0	0.04	17.64	0.00	1.953	10.02	3.33	4.9	95.1	0.0	0.98	1.41	0.73	0.77	1.17	9921	1223	4	0	3	0	0	logfile
✔	8HLP	34880	2024-11-19	2022-11-30	3.5	3.86	3.64	3.8	0.005	0.63	0.0	0.04	14.18	0.01	1.964	10.27	0.00	8.6	91.4	0.0	-0.88	0.63	0.79	2.14	3.8	0.003	0.67	0.0	0.04	16.07	0.00	2.352	8.34	2.13	5.3	94.7	0.0	-0.22	0.46	0.62	0.78	1.49	19067	2332	5	0	18	0	0	logfile
✔	8HLA	34859	2024-11-20	2022-11-29	2.81	2.68	2.73	2.8	0.011	0.96	0.0	0.06	14.25	0.01	2.027	19.94	0.09	8.2	91.7	0.1	-2.33	0.62	0.83	3.63	2.9	0.004	0.68	0.0	0.05	17.40	0.00	2.406	12.91	3.06	5.3	94.6	0.1	-0.55	0.94	0.62	0.84	3.38	20868	2580	20	0	12	0	0	logfile
✔	8FAZ	28961	2024-11-14	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	11.25	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	3.0	0.004	0.71	0.0	0.04	15.43	0.00	1.946	12.27	1.87	2.9	97.1	0.0	0.43	2.04	0.83	0.82	2.63	7331	926	7	0	5	0	0	logfile
✔	8BTG	16229	2024-11-19	2022-11-28	3.2	4.18	3.29	3.3	0.004	0.71	0.0	0.05	18.07	0.00	1.067	17.56	0.05	2.9	97.1	0.0	1.09	0.73	0.58	2.18	3.4	0.002	0.55	0.0	0.04	18.63	0.00	1.943	8.69	1.12	2.3	97.7	0.0	2.20	0.49	0.89	0.82	2.23	20330	2339	16	65	14	0	0	logfile

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