Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F6Q	28888	2024-11-16	2022-11-17	3.6	3.83	3.72	3.9	0.006	0.72	0.0	0.04	12.98	0.00	2.109	20.44	0.00	2.3	97.7	0.0	0.52	0.75	0.82	0.69	3.9	0.003	0.58	0.0	0.03	16.66	0.00	2.610	11.81	1.69	2.0	98.0	0.0	4.13	0.69	0.73	0.80	1.13	12352	1592	8	0	0	0	0	logfile
✔	8F6Y	28892	2024-11-18	2022-11-17	2.79	3.79	2.77	3.3	0.007	0.76	0.0	0.05	15.56	0.00	2.076	5.34	0.00	2.7	97.3	0.0	0.98	0.82	0.90	4.19	3.4	0.002	0.50	0.0	0.04	13.74	0.00	2.473	3.88	0.48	1.6	98.4	0.0	2.21	0.44	0.77	0.83	3.77	17053	2022	18	0	36	5	0	logfile
✔	8F6R	28889	2024-11-16	2022-11-17	4.0	4.17	3.97	4.1	0.005	0.75	0.0	0.04	12.99	0.00	1.997	17.80	0.00	1.4	98.6	0.0	-1.46	0.77	0.81	—	4.1	0.003	0.74	0.0	0.04	16.53	0.00	2.414	13.17	1.71	1.4	98.6	0.0	2.89	1.35	0.77	0.81	—	10290	1314	6	0	0	0	0	logfile
✔	8F6Z	28893	2024-11-18	2022-11-17	2.7	3.51	2.66	3.1	0.007	0.80	0.0	0.05	15.71	0.00	1.907	8.80	0.00	3.0	97.0	0.0	0.31	0.82	0.87	4.21	3.2	0.004	0.55	0.0	0.04	14.10	0.00	2.418	6.27	0.86	2.4	97.6	0.0	1.39	1.14	0.77	0.85	3.89	16997	2015	19	0	37	5	0	logfile
✔	8BPR	16164	2024-11-16	2022-11-17	3.65	4.06	3.85	3.9	0.004	0.51	0.0	0.04	17.51	0.00	2.072	3.39	0.66	3.0	97.0	0.0	0.86	0.78	0.76	1.72	3.9	0.003	0.62	0.0	0.04	18.51	0.00	1.968	5.69	2.48	3.2	96.8	0.0	1.86	3.76	0.80	0.80	1.40	10055	1401	14	44	7	0	0	logfile
✔	8BPG	16152	2024-11-15	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.028	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.75	0.0	0.05	14.78	0.00	2.515	7.73	3.47	5.7	94.2	0.1	-0.61	1.47	0.88	0.85	2.20	8650	1106	10	0	6	0	0	logfile
✔	8HHM	34804	2024-11-14	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.4	0.003	0.57	0.0	0.04	21.33	0.00	2.083	7.45	1.67	1.4	98.6	0.0	2.17	1.78	0.82	0.82	2.32	5558	516	7	72	2	0	0	logfile
✔	8BPC	16149	2024-11-15	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.53	0.0	0.04	18.01	0.00	1.976	6.74	2.63	2.2	97.8	0.0	1.37	2.45	0.75	0.83	2.63	8433	1030	7	0	6	44	0	logfile
✔	8BPB	16148	2024-11-15	2022-11-16	2.8	2.48	3.00	2.8	0.004	0.61	0.0	0.04	17.77	0.00	1.755	8.92	2.96	2.5	97.5	0.0	0.64	0.74	0.80	2.51	2.8	0.002	0.53	0.0	0.04	18.11	0.00	1.990	6.03	3.07	2.4	97.6	0.0	1.58	1.07	0.72	0.80	2.30	8384	1030	7	0	6	12	0	logfile
✔	8HHL	34803	2024-11-14	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.57	0.0	0.04	22.89	0.00	1.923	5.39	2.50	0.8	99.2	0.0	2.97	2.37	0.82	0.85	3.72	6971	592	6	111	4	0	0	logfile
✔	8HHo	34805	2024-11-14	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	15.65	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.004	0.65	0.0	0.04	16.38	0.00	2.515	13.25	1.52	2.7	97.3	0.0	1.65	0.37	0.47	0.80	1.98	3274	416	2	0	1	0	0	logfile
✔	8F6F	28882	2024-11-16	2022-11-16	3.6	3.88	3.63	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.004	0.68	0.0	0.04	15.55	0.00	1.914	6.99	2.21	5.9	94.0	0.1	-0.22	1.18	0.72	0.82	2.61	10344	1344	8	0	6	0	0	logfile
✔	8F6J	28885	2024-11-16	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.65	0.0	0.04	16.27	0.00	2.095	7.86	3.32	6.5	93.1	0.4	-0.55	0.43	0.72	0.77	1.83	10472	1366	8	0	8	0	0	logfile
✔	8BPF	16151	2024-11-19	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.71	0.0	0.05	15.27	0.00	2.403	8.18	2.37	7.8	92.2	0.0	-0.97	1.74	0.89	0.80	1.82	18593	2370	23	0	12	0	0	logfile
✔	8F6P	28887	2024-11-19	2022-11-16	3.2	3.45	3.25	3.5	0.010	1.33	0.0	0.05	19.79	0.00	2.073	8.63	0.12	3.6	96.4	0.0	1.91	0.56	0.77	2.70	3.5	0.003	0.49	0.0	0.03	14.63	0.00	2.406	10.40	1.18	3.1	96.9	0.0	2.29	0.33	0.56	0.80	2.41	17507	1091	4	0	34	0	8229	logfile
✔	8F6i	28884	2024-11-16	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.63	0.0	0.04	13.78	0.00	1.998	9.72	0.09	5.7	94.3	0.0	0.31	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	8BPA	16147	2024-11-16	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile
✔	8F6K	28886	2024-11-18	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.90	0.00	1.870	10.45	2.31	7.2	92.4	0.4	0.97	0.51	0.49	0.73	2.32	17298	1132	8	0	4	0	8586	logfile
✔	8HGM	34742	2024-11-14	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.70	0.0	0.04	14.50	0.00	2.473	6.77	2.41	4.0	96.0	0.0	0.42	0.44	0.81	0.82	2.59	4886	632	4	0	2	0	0	logfile
✔	8HGS	34746	2024-11-19	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.87	0.0	0.05	14.34	0.00	2.487	10.64	1.88	8.6	91.4	0.1	-1.60	1.46	0.72	0.70	2.33	10080	1280	8	0	12	0	0	logfile

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