Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F6J	28885	2024-11-16	2022-11-16	3.7	3.93	3.62	3.9	0.003	0.51	0.0	0.04	14.39	0.01	2.084	6.66	0.00	6.0	93.6	0.4	-0.50	0.73	0.81	1.81	3.9	0.003	0.65	0.0	0.04	16.27	0.00	2.095	7.86	3.32	6.5	93.1	0.4	-0.55	0.43	0.72	0.77	1.83	10472	1366	8	0	8	0	0	logfile
✔	8F6K	28886	2024-11-18	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.56	0.0	0.03	15.90	0.00	1.870	10.45	2.31	7.2	92.4	0.4	0.97	0.51	0.49	0.73	2.32	17298	1132	8	0	4	0	8586	logfile
✔	8F6i	28884	2024-11-16	2022-11-16	4.03	4.27	4.04	4.2	0.002	0.50	0.0	0.04	13.67	0.00	2.070	7.30	0.00	5.0	94.9	0.2	0.18	0.76	0.80	—	4.2	0.003	0.63	0.0	0.04	13.78	0.00	1.998	9.72	0.09	5.7	94.3	0.0	0.31	0.46	0.77	0.81	—	10367	1351	8	0	6	0	0	logfile
✔	8BPF	16151	2024-11-19	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.40	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.71	0.0	0.05	15.27	0.00	2.403	8.18	2.37	7.8	92.2	0.0	-0.97	1.74	0.89	0.80	1.82	18593	2370	23	0	12	0	0	logfile
✔	8HHL	34803	2024-11-14	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.57	0.0	0.04	22.89	0.00	1.923	5.39	2.50	0.8	99.2	0.0	2.97	2.37	0.82	0.85	3.72	6971	592	6	111	4	0	0	logfile
✔	8BPG	16152	2024-11-15	2022-11-16	3.1	3.80	3.06	3.3	0.010	1.11	0.0	0.08	12.89	0.01	2.028	3.14	0.00	6.6	93.4	0.0	-0.90	0.80	0.74	2.23	3.4	0.003	0.75	0.0	0.05	14.78	0.00	2.515	7.73	3.47	5.7	94.2	0.1	-0.61	1.47	0.88	0.85	2.20	8650	1106	10	0	6	0	0	logfile
✔	8BPA	16147	2024-11-16	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile
✔	8BPB	16148	2024-11-15	2022-11-16	2.8	2.48	3.00	2.8	0.004	0.61	0.0	0.04	17.77	0.00	1.755	8.92	2.96	2.5	97.5	0.0	0.64	0.74	0.80	2.51	2.8	0.002	0.53	0.0	0.04	18.11	0.00	1.990	6.03	3.07	2.4	97.6	0.0	1.58	1.07	0.72	0.80	2.30	8384	1030	7	0	6	12	0	logfile
✔	8BPC	16149	2024-11-15	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.53	0.0	0.04	18.01	0.00	1.976	6.74	2.63	2.2	97.8	0.0	1.37	2.45	0.75	0.83	2.63	8433	1030	7	0	6	44	0	logfile
✔	8F6F	28882	2024-11-16	2022-11-16	3.6	3.88	3.63	3.9	0.003	0.52	0.0	0.04	13.45	0.00	2.011	6.45	0.09	4.6	95.3	0.2	-0.37	0.75	0.82	2.79	3.9	0.004	0.68	0.0	0.04	15.55	0.00	1.914	6.99	2.21	5.9	94.0	0.1	-0.22	1.18	0.72	0.82	2.61	10344	1344	8	0	6	0	0	logfile
✔	8F5Z	28869	2024-11-17	2022-11-15	3.2	2.36	—	2.1	0.003	0.59	0.0	0.04	17.24	0.01	2.234	9.25	0.47	2.5	97.5	0.0	0.05	0.75	0.77	1.85	2.1	0.003	0.61	0.0	0.04	17.65	0.00	2.521	8.08	3.76	2.3	97.7	0.0	0.70	0.38	0.74	0.76	1.73	13598	1724	4	0	2	0	0	logfile
✔	8HGo	34744	2024-11-15	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	10.13	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	2.1	0.003	0.74	0.0	0.05	14.36	0.00	2.511	9.74	1.95	7.1	92.9	0.0	-2.37	0.79	0.74	0.74	3.09	9227	1178	6	0	8	0	0	logfile
✔	8HGP	34745	2024-11-15	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	10.20	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.77	0.0	0.05	11.39	0.00	2.380	12.71	0.10	9.6	90.4	0.0	-2.31	0.87	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8BoB	16140	2024-11-17	2022-11-15	2.94	3.13	2.90	3.0	0.009	0.87	0.0	0.06	15.31	0.00	2.208	10.38	3.17	4.2	95.5	0.3	-1.98	0.85	0.84	3.45	3.0	0.003	0.65	0.0	0.04	15.71	0.00	2.476	4.34	0.60	2.3	97.7	0.0	1.23	0.67	0.86	0.88	2.64	12712	1604	8	0	4	0	0	logfile
✔	8HGM	34742	2024-11-14	2022-11-15	3.4	4.02	3.45	3.8	0.004	0.59	0.0	0.04	13.09	0.00	2.180	7.30	0.00	4.3	95.7	0.0	0.29	0.84	0.85	2.62	3.8	0.003	0.70	0.0	0.04	14.50	0.00	2.473	6.77	2.41	4.0	96.0	0.0	0.42	0.44	0.81	0.82	2.59	4886	632	4	0	2	0	0	logfile
✔	8HGS	34746	2024-11-19	2022-11-15	3.81	2.51	3.80	3.8	0.004	0.75	0.0	0.06	13.68	0.01	2.368	3.29	0.00	8.1	91.9	0.0	-3.50	0.66	0.62	1.35	2.2	0.005	0.87	0.0	0.05	14.34	0.00	2.487	10.64	1.88	8.6	91.4	0.1	-1.60	1.46	0.72	0.70	2.33	10080	1280	8	0	12	0	0	logfile
✔	8Bo2	16138	2024-11-17	2022-11-14	3.1	3.79	3.14	3.5	0.017	1.94	10.0	0.11	14.14	0.02	2.505	4.29	0.47	6.7	93.2	0.1	-0.67	0.59	0.53	2.30	3.5	0.003	0.71	0.0	0.04	15.86	0.00	2.470	11.19	1.41	4.9	94.9	0.2	-0.70	1.11	0.77	0.80	1.37	14037	1803	6	0	0	0	0	logfile
✔	8HG7	34737	2024-11-14	2022-11-14	3.1	2.83	3.04	3.0	0.017	2.19	2.0	0.09	14.29	0.01	2.121	6.92	2.19	4.6	95.4	0.0	-2.67	0.56	0.81	4.34	3.0	0.002	0.61	0.0	0.04	15.30	0.00	2.253	6.93	1.19	2.1	97.9	0.0	2.26	1.19	0.63	0.83	3.60	4808	619	3	0	3	2	0	logfile
✔	8BNZ	16137	2024-11-17	2022-11-14	3.5	3.50	3.32	3.4	0.018	2.27	15.0	0.12	14.41	0.02	2.180	3.88	0.67	5.0	94.9	0.1	-0.42	0.61	0.58	2.40	3.4	0.003	0.71	0.0	0.05	16.34	0.00	2.438	10.33	2.08	5.0	94.9	0.1	-0.65	1.60	0.70	0.73	2.14	14073	1807	6	0	0	0	0	logfile
✔	8F5B	28864	2024-11-18	2022-11-13	3.95	4.66	3.92	4.1	0.004	0.72	0.0	0.04	16.73	0.00	1.993	14.24	0.07	6.4	93.6	0.0	0.29	0.71	0.76	0.75	4.1	0.003	0.70	0.0	0.04	15.21	0.00	1.971	10.37	1.86	5.8	94.2	0.0	0.35	0.33	0.71	0.76	0.14	14152	1924	4	0	14	0	0	logfile

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