Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HD6	34670	2024-11-15	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	8F0J	28758	2024-11-16	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.57	0.0	0.04	17.13	0.00	2.462	5.32	1.32	2.1	97.9	0.0	1.50	0.84	0.54	0.78	5.45	9678	1157	12	0	18	25	0	logfile
✔	8HCQ	34663	2024-11-15	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	17.16	0.00	2.542	8.06	5.48	3.8	96.0	0.2	0.25	1.04	0.76	0.78	1.78	8991	1157	6	0	0	0	0	logfile
✔	8HCo	34660	2024-11-15	2022-11-02	4.1	3.86	3.97	4.0	0.007	0.97	0.0	0.06	15.44	0.01	2.290	6.53	10.99	2.4	97.6	0.0	-2.38	0.52	0.65	—	4.0	0.004	0.73	0.0	0.04	13.12	0.00	2.433	13.82	0.00	2.6	97.4	0.0	0.19	1.34	0.57	0.76	—	9330	1194	12	0	1	0	0	logfile
✔	8F0G	28756	2024-11-19	2022-11-02	3.35	3.91	3.35	3.6	0.011	0.63	0.0	0.06	14.46	0.01	2.238	7.55	0.14	3.6	96.4	0.0	-0.20	0.79	0.84	2.12	3.6	0.003	0.57	0.0	0.04	14.58	0.00	2.551	5.65	1.57	3.8	96.2	0.0	0.18	1.36	0.80	0.86	1.79	19635	2492	11	0	24	0	0	logfile
✔	8F0H	28757	2024-11-14	2022-11-02	3.18	3.63	3.09	3.5	0.003	0.50	0.0	0.04	10.68	0.00	2.256	7.02	0.38	4.0	96.0	0.0	-0.58	0.74	0.80	3.08	3.5	0.003	0.73	0.0	0.04	14.24	0.01	2.444	9.19	3.20	5.1	94.9	0.0	-1.12	1.36	0.73	0.81	2.64	4959	634	6	0	3	0	0	logfile
✔	8HC6	34653	2024-11-14	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.64	0.0	0.04	13.05	0.00	2.493	13.46	0.00	7.1	92.9	0.0	-1.54	0.76	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	8HC4	34651	2024-11-18	2022-11-01	3.54	3.35	3.50	3.4	0.003	0.53	0.0	0.04	15.96	0.00	2.239	5.29	0.04	4.0	96.0	0.0	-0.76	0.48	0.48	0.93	3.4	0.004	0.61	0.0	0.04	16.29	0.00	2.394	8.53	4.00	4.7	95.2	0.0	-0.90	0.54	0.52	0.56	1.30	45078	5805	30	0	54	0	0	logfile
✔	8HC8	34655	2024-11-14	2022-11-01	3.95	4.00	3.84	4.0	0.003	0.71	0.0	0.05	16.60	0.01	2.317	5.70	0.56	4.2	95.8	0.0	-1.17	0.64	0.70	0.79	4.0	0.004	1.18	1.0	0.04	16.73	0.00	2.337	8.87	3.34	5.2	94.8	0.0	-1.09	0.53	0.67	0.75	1.40	4832	628	4	0	1	0	0	logfile
✔	8HBV	34644	2024-11-14	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.8	0.003	0.54	0.0	0.04	17.21	0.00	2.452	6.11	2.96	2.7	97.3	0.0	2.91	0.94	0.59	0.88	3.61	3279	414	3	0	3	0	0	logfile
✔	8HBW	34645	2024-11-14	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.8	0.004	0.58	0.0	0.04	16.84	0.00	2.528	6.53	1.48	2.0	98.0	0.0	3.03	1.22	0.62	0.88	4.27	3309	414	3	0	4	0	0	logfile
✔	8EZ3	28728	2024-11-14	2022-10-31	2.5	2.94	2.70	2.9	0.004	0.64	0.0	0.05	18.43	0.00	2.080	8.39	4.85	4.1	95.9	0.0	-0.81	0.50	0.86	4.53	2.9	0.003	0.57	0.0	0.05	16.25	0.00	2.546	6.82	4.29	4.2	95.8	0.0	-0.71	0.25	0.45	0.81	3.96	4894	622	5	0	9	0	0	logfile
✔	8EZ8	28730	2024-11-14	2022-10-31	2.78	3.04	2.78	3.0	0.004	0.62	0.0	0.05	17.32	0.00	1.943	10.37	1.89	4.1	95.8	0.2	-0.51	0.53	0.83	3.28	3.0	0.003	0.57	0.0	0.05	16.21	0.00	2.564	6.56	2.65	3.4	96.4	0.2	-0.39	0.23	0.52	0.83	3.12	4847	621	5	0	9	0	0	logfile
✔	8EZ7	28729	2024-11-14	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.005	0.66	0.0	0.05	15.78	0.00	2.465	7.49	2.26	4.4	95.6	0.0	-0.42	0.24	0.50	0.85	3.99	4927	624	5	0	9	0	0	logfile
✔	8BH6	16048	2024-11-19	2022-10-30	3.7	4.20	3.87	3.9	0.004	0.72	2.0	0.04	22.90	0.01	2.148	23.15	1.06	6.5	93.3	0.1	-3.22	0.82	0.66	0.41	3.6	0.008	1.03	0.0	0.05	23.64	0.01	1.948	38.52	4.00	12.6	87.4	0.0	-3.29	2.08	0.85	0.74	0.42	51548	2311	20	1547	0	0	0	logfile
✔	8BH7	16049	2024-11-19	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.008	1.03	0.0	0.05	25.85	0.01	1.852	72.82	0.05	13.6	86.4	0.0	-3.04	1.33	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	8HBN	34638	2024-11-14	2022-10-29	3.81	4.36	3.77	4.0	0.007	1.24	5.0	0.06	18.57	0.01	2.254	13.99	6.10	7.4	90.0	2.7	-1.66	0.66	0.81	1.11	4.0	0.003	0.83	0.0	0.04	17.81	0.00	2.475	6.87	3.92	6.1	93.6	0.4	-0.60	1.55	0.67	0.83	1.51	4189	536	2	0	0	0	0	logfile
✔	8EZ0	28725	2024-11-18	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.014	0.75	0.0	0.04	16.61	0.01	2.508	10.43	2.67	7.2	92.8	0.0	-1.54	1.16	0.84	0.82	1.91	14640	1815	6	0	0	0	0	logfile
✔	8EYY	28724	2024-11-19	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.003	0.61	0.0	0.04	13.28	0.00	2.388	16.39	0.00	6.8	93.1	0.1	-1.26	1.14	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8BGW	16041	2024-11-17	2022-10-28	2.2	1.96	2.24	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.005	0.82	0.0	0.04	16.31	0.00	1.825	14.97	1.02	4.1	95.9	0.0	1.02	0.39	0.76	0.84	4.64	12927	1500	6	0	25	449	0	logfile

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