Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BGV	16039	2024-11-14	2022-10-28	3.27	3.26	3.18	3.4	0.009	1.72	0.0	0.10	12.41	0.01	2.452	0.84	1.49	6.7	93.3	0.0	-3.78	0.46	0.89	5.03	3.3	0.006	0.77	0.0	0.05	13.96	0.00	2.537	3.11	1.92	8.4	91.6	0.0	-2.66	1.30	0.41	0.87	3.74	4109	539	7	0	0	0	0	logfile
✔	8EYR	28693	2024-11-17	2022-10-28	4.0	4.25	4.10	4.0	0.005	0.75	0.0	0.05	17.46	0.01	2.099	23.63	0.27	11.5	88.3	0.2	-2.62	0.86	0.82	—	4.0	0.003	0.70	0.0	0.05	17.77	0.00	2.560	11.55	4.02	7.9	91.9	0.2	-2.10	0.45	0.86	0.82	—	13635	1705	4	0	0	0	0	logfile
✔	8HBF	34627	2024-11-15	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.59	0.0	0.04	16.08	0.00	2.019	7.54	2.16	2.6	97.4	0.0	1.24	0.30	0.73	0.83	2.49	8448	1095	4	0	6	0	0	logfile
✔	8HBH	34632	2024-11-15	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.60	0.0	0.04	15.66	0.00	1.115	7.45	2.81	2.1	97.9	0.0	0.94	0.30	0.72	0.81	2.53	8502	1099	4	0	5	0	0	logfile
✔	8BGW	16041	2024-11-17	2022-10-28	2.2	1.96	2.24	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.005	0.82	0.0	0.04	16.31	0.00	1.825	14.97	1.02	4.1	95.9	0.0	1.02	0.39	0.76	0.84	4.64	12927	1500	6	0	25	449	0	logfile
✔	8BGU	16036	2024-11-14	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	23.47	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.005	0.72	0.0	0.04	24.07	0.00	2.035	26.40	0.00	12.9	87.1	0.0	-1.37	2.45	0.92	0.88	—	4779	447	5	121	1	0	0	logfile
✔	8BGS	16035	2024-11-14	2022-10-28	3.16	3.15	2.98	3.3	0.009	1.64	0.0	0.10	13.08	0.01	2.368	1.46	0.00	6.8	93.2	0.0	-3.72	0.43	0.86	5.04	3.3	0.006	0.79	0.0	0.05	15.30	0.00	2.594	4.39	2.16	5.9	94.1	0.0	-2.87	1.29	0.36	0.81	3.75	4018	525	7	0	0	0	0	logfile
✔	8HBD	34619	2024-11-15	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.003	0.68	0.0	0.04	17.33	0.00	2.496	12.19	4.47	3.3	96.7	0.0	0.22	1.19	0.77	0.79	1.85	8803	1158	6	0	0	0	0	logfile
✔	8BG6	16024	2024-11-14	2022-10-27	4.11	4.22	3.92	4.2	0.006	0.94	0.0	0.06	12.58	0.01	2.348	6.39	0.00	6.9	93.1	0.0	-0.90	0.73	0.80	—	4.1	0.003	0.65	0.0	0.04	12.71	0.00	2.602	4.91	0.00	4.8	95.2	0.0	-0.15	0.95	0.74	0.84	—	3124	398	4	0	1	0	0	logfile
✔	8EYK	28691	2024-11-18	2022-10-27	2.7	3.20	2.66	3.0	0.013	1.00	0.0	0.05	16.76	0.00	2.171	10.91	1.25	2.1	97.9	0.0	0.16	0.76	0.82	3.29	3.0	0.004	0.63	0.0	0.04	16.52	0.00	2.412	9.48	1.91	1.8	98.2	0.0	0.08	0.27	0.76	0.82	3.16	15386	2036	4	0	6	0	0	logfile
✔	8EYi	28690	2024-11-18	2022-10-27	2.7	3.30	2.69	3.1	0.017	0.98	0.0	0.05	16.32	0.01	2.204	10.69	2.06	2.0	98.0	0.0	0.27	0.80	0.81	2.89	3.1	0.005	0.63	0.0	0.04	16.26	0.00	2.386	9.02	2.12	2.0	98.0	0.0	0.43	1.06	0.80	0.82	3.09	16252	2172	4	0	4	0	0	logfile
✔	8HB0	34610	2024-11-14	2022-10-27	2.9	2.62	2.75	2.7	0.015	2.22	4.0	0.09	13.36	0.00	2.153	6.66	0.80	3.9	95.9	0.2	-2.30	0.57	0.82	3.78	2.7	0.003	0.67	0.0	0.04	14.77	0.00	2.247	8.22	1.40	1.3	98.7	0.0	2.16	0.48	0.61	0.82	3.83	4778	615	3	0	3	4	0	logfile
✔	8BG9	16027	2024-11-13	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.004	0.69	0.0	0.05	15.71	0.00	2.604	5.47	5.36	8.6	91.4	0.0	-4.02	0.98	0.38	0.81	5.38	1692	222	6	0	0	0	0	logfile
✔	8HAH	34589	2024-11-18	2022-10-26	3.9	5.19	3.80	2.8	0.003	0.55	0.0	0.03	24.02	0.00	2.274	8.74	0.00	2.6	97.4	0.0	1.59	0.83	0.62	0.32	2.8	0.004	0.70	0.0	0.04	26.85	0.00	2.480	14.54	2.52	3.0	97.0	0.0	0.96	2.55	0.91	0.82	0.73	17096	1287	11	328	0	0	0	logfile
✔	8HAM	34596	2024-11-18	2022-10-26	4.5	4.52	4.33	3.7	0.003	0.56	0.0	0.03	25.16	0.00	2.260	9.62	0.00	1.4	98.6	0.0	2.08	0.84	0.77	—	3.7	0.004	0.61	0.0	0.04	26.67	0.00	2.426	11.36	0.00	2.5	97.5	0.0	2.02	0.76	0.87	0.84	—	17177	1288	11	330	0	0	0	logfile
✔	8HAF	34587	2024-11-15	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	16.06	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.004	0.81	0.0	0.07	16.35	0.00	1.673	6.01	3.19	3.6	96.4	0.0	0.97	0.52	0.77	0.80	3.04	9681	1167	7	0	17	0	0	logfile
✔	8HAJ	34592	2024-11-18	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.86	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.64	0.0	0.04	26.39	0.00	2.356	13.84	0.00	3.3	96.7	0.0	1.46	0.76	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	8HAT	34608	2024-11-18	2022-10-26	3.03	3.41	3.20	3.4	0.009	1.51	21.0	0.08	19.56	0.01	1.173	39.65	5.43	16.5	79.2	4.3	-4.89	0.53	0.58	0.77	3.4	0.003	0.84	0.0	0.05	18.81	0.01	2.432	12.53	5.37	13.8	85.5	0.6	-3.53	1.66	0.55	0.63	0.74	16967	2206	6	0	0	0	0	logfile
✔	8HA0	34585	2024-11-15	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.58	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.004	0.63	0.0	0.04	15.71	0.00	2.491	4.44	3.02	3.7	96.0	0.3	1.54	1.53	0.79	0.83	4.07	9385	1155	7	0	7	0	0	logfile
✔	8HAU	34609	2024-11-18	2022-10-26	3.02	3.24	3.04	3.3	0.006	0.62	8.0	0.05	17.46	0.01	1.876	23.57	0.46	2.0	98.0	0.0	0.97	0.58	0.65	0.40	3.3	0.002	0.57	0.0	0.04	17.24	0.00	2.523	4.67	3.22	2.5	97.5	0.0	-0.21	1.65	0.63	0.76	1.69	16157	2080	12	0	6	0	0	logfile

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