Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HDZ	34684	2024-11-16	2022-11-07	3.05	3.28	3.11	3.3	0.002	0.44	0.0	0.04	13.94	0.00	2.174	9.75	0.00	4.3	95.7	0.1	0.18	0.49	0.48	0.43	3.3	0.003	0.65	0.0	0.04	16.40	0.00	2.398	13.43	2.24	6.4	93.5	0.1	-0.82	1.05	0.55	0.58	0.79	11861	1457	3	0	0	0	0	logfile
✔	8HDS	34679	2024-11-19	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.73	0.0	0.04	16.17	0.00	2.488	7.87	3.17	8.8	91.2	0.0	-2.67	1.24	0.57	0.79	1.74	53532	6864	24	0	0	0	0	logfile
✔	8HDP	34677	2024-11-15	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.82	0.0	0.06	15.45	0.00	2.451	9.01	2.51	3.2	96.8	0.0	0.56	1.77	0.68	0.80	1.88	8282	1041	6	0	5	0	0	logfile
✔	8HDH	34673	2024-11-14	2022-11-04	3.1	2.51	3.16	3.1	0.016	2.21	1.0	0.09	14.06	0.01	2.036	6.66	1.00	3.9	95.6	0.5	-2.42	0.57	0.77	3.81	3.1	0.002	0.60	0.0	0.04	15.39	0.00	2.227	6.56	3.20	2.1	97.9	0.0	2.32	1.11	0.64	0.80	3.17	4778	615	3	0	3	4	0	logfile
✔	8BJF	16088	2024-11-16	2022-11-04	3.0	3.24	3.01	3.3	0.005	0.76	0.0	0.05	13.71	0.01	2.273	3.58	0.38	2.4	97.6	0.0	-1.24	0.61	0.85	3.29	3.3	0.003	0.59	0.0	0.04	14.65	0.00	2.620	6.16	0.77	1.9	98.1	0.0	1.39	0.44	0.60	0.85	2.42	9741	1195	2	0	6	0	0	logfile
✔	8F1D	28795	2024-11-17	2022-11-04	2.94	3.13	2.94	3.2	0.004	0.51	0.0	0.04	10.40	0.00	2.321	4.94	0.59	4.4	95.6	0.0	1.12	0.43	0.66	4.21	3.1	0.003	0.62	0.0	0.04	13.48	0.00	2.534	4.12	1.78	5.0	95.0	0.0	0.78	0.42	0.66	0.85	3.36	12888	1576	8	0	12	0	0	logfile
✔	8F1E	28796	2024-11-16	2022-11-04	3.28	4.11	3.32	3.8	0.003	0.67	0.0	0.04	17.52	0.00	1.853	11.76	0.17	1.7	98.3	0.0	1.76	0.88	0.84	1.17	3.7	0.003	0.59	0.0	0.04	17.48	0.00	1.925	9.12	2.00	2.0	98.0	0.0	2.20	0.94	0.90	0.90	1.16	10174	1273	5	0	2	0	0	logfile
✔	8F0X	28782	2024-11-15	2022-11-04	3.21	3.54	3.23	3.4	0.004	0.65	0.0	0.04	13.35	0.00	2.221	7.37	0.50	1.7	98.3	0.0	0.47	0.62	0.80	3.78	3.4	0.003	0.52	0.0	0.04	15.20	0.00	2.104	4.99	1.10	1.5	98.5	0.0	2.83	0.68	0.62	0.82	1.98	8743	1101	3	0	0	0	0	logfile
✔	8F19	28788	2024-11-16	2022-11-04	3.49	3.69	3.49	3.6	0.003	0.67	0.0	0.04	14.18	0.00	1.897	7.81	0.20	0.9	99.1	0.0	1.08	0.72	0.78	2.20	3.6	0.003	0.56	0.0	0.04	15.97	0.00	1.981	6.27	0.91	1.4	98.6	0.0	2.28	1.58	0.73	0.81	1.67	8717	1087	3	0	2	0	0	logfile
✔	8BJM	16089	2024-11-18	2022-11-04	2.2	2.55	2.08	2.4	0.005	0.55	0.0	0.04	13.85	0.00	2.200	4.88	1.17	0.5	99.5	0.0	2.08	0.83	0.88	5.60	2.4	0.003	0.54	0.0	0.04	16.52	0.00	2.509	3.70	1.46	0.5	99.5	0.0	2.58	0.33	0.84	0.88	5.07	16655	2050	22	0	0	498	0	logfile
✔	8F0J	28758	2024-11-16	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.57	0.0	0.04	17.13	0.00	2.462	5.32	1.32	2.1	97.9	0.0	1.50	0.84	0.54	0.78	5.45	9678	1157	12	0	18	25	0	logfile
✔	8HCX	34667	2024-11-15	2022-11-03	3.5	2.57	3.28	3.3	0.003	0.62	0.0	0.04	16.43	0.00	2.117	10.84	0.31	2.5	97.2	0.4	0.14	0.71	0.71	1.23	3.2	0.004	0.75	0.0	0.04	17.18	0.00	2.356	12.94	5.35	3.6	96.2	0.2	0.32	1.11	0.73	0.73	1.27	8933	1159	6	0	0	0	0	logfile
✔	8HD7	34671	2024-11-15	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.006	0.74	0.0	0.04	23.90	0.01	1.822	12.81	0.00	0.0	0.0	0.0	—	1.70	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	8HD6	34670	2024-11-15	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	8F0H	28757	2024-11-14	2022-11-02	3.18	3.63	3.09	3.5	0.003	0.50	0.0	0.04	10.68	0.00	2.256	7.02	0.38	4.0	96.0	0.0	-0.58	0.74	0.80	3.08	3.5	0.003	0.73	0.0	0.04	14.24	0.01	2.444	9.19	3.20	5.1	94.9	0.0	-1.12	1.36	0.73	0.81	2.64	4959	634	6	0	3	0	0	logfile
✔	8HCo	34660	2024-11-15	2022-11-02	4.1	3.86	3.97	4.0	0.007	0.97	0.0	0.06	15.44	0.01	2.290	6.53	10.99	2.4	97.6	0.0	-2.38	0.52	0.65	—	4.0	0.004	0.73	0.0	0.04	13.12	0.00	2.433	13.82	0.00	2.6	97.4	0.0	0.19	1.34	0.57	0.76	—	9330	1194	12	0	1	0	0	logfile
✔	8HCQ	34663	2024-11-15	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	17.16	0.00	2.542	8.06	5.48	3.8	96.0	0.2	0.25	1.04	0.76	0.78	1.78	8991	1157	6	0	0	0	0	logfile
✔	8F0G	28756	2024-11-19	2022-11-02	3.35	3.91	3.35	3.6	0.011	0.63	0.0	0.06	14.46	0.01	2.238	7.55	0.14	3.6	96.4	0.0	-0.20	0.79	0.84	2.12	3.6	0.003	0.57	0.0	0.04	14.58	0.00	2.551	5.65	1.57	3.8	96.2	0.0	0.18	1.36	0.80	0.86	1.79	19635	2492	11	0	24	0	0	logfile
✔	8HC6	34653	2024-11-14	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.64	0.0	0.04	13.05	0.00	2.493	13.46	0.00	7.1	92.9	0.0	-1.54	0.76	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	8HC8	34655	2024-11-14	2022-11-01	3.95	4.00	3.84	4.0	0.003	0.71	0.0	0.05	16.60	0.01	2.317	5.70	0.56	4.2	95.8	0.0	-1.17	0.64	0.70	0.79	4.0	0.004	1.18	1.0	0.04	16.73	0.00	2.337	8.87	3.34	5.2	94.8	0.0	-1.09	0.53	0.67	0.75	1.40	4832	628	4	0	1	0	0	logfile

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