Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HAS	34607	2024-11-18	2022-10-26	2.89	3.13	2.97	3.1	0.009	1.23	5.0	0.06	20.79	0.01	2.141	9.91	6.98	3.9	95.7	0.4	-1.95	0.67	0.78	1.50	3.1	0.005	0.85	1.0	0.05	18.84	0.00	2.156	5.79	4.52	5.6	94.2	0.1	-1.56	1.17	0.64	0.78	2.18	16640	2141	12	0	6	0	0	logfile
✔	8HAL	34595	2024-11-18	2022-10-26	4.4	3.43	4.32	3.4	0.003	0.63	0.0	0.04	24.76	0.00	2.187	12.41	0.00	1.7	98.3	0.0	1.26	0.85	0.73	—	2.9	0.003	0.68	0.0	0.04	26.53	0.00	2.311	13.06	0.00	2.6	97.4	0.0	0.84	2.69	0.87	0.79	—	16585	1292	11	302	0	0	0	logfile
✔	8HAJ	34592	2024-11-18	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.86	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.64	0.0	0.04	26.39	0.00	2.356	13.84	0.00	3.3	96.7	0.0	1.46	0.76	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	8HA0	34585	2024-11-15	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.58	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.004	0.63	0.0	0.04	15.71	0.00	2.491	4.44	3.02	3.7	96.0	0.3	1.54	1.53	0.79	0.83	4.07	9385	1155	7	0	7	0	0	logfile
✔	8HAF	34587	2024-11-15	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	16.06	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.004	0.81	0.0	0.07	16.35	0.00	1.673	6.01	3.19	3.6	96.4	0.0	0.97	0.52	0.77	0.80	3.04	9681	1167	7	0	17	0	0	logfile
✔	8HAG	34588	2024-11-18	2022-10-26	3.2	3.77	3.22	2.6	0.003	0.56	0.0	0.03	24.83	0.00	2.220	10.62	0.00	1.7	98.3	0.0	2.13	0.85	0.78	0.67	2.2	0.003	0.59	0.0	0.03	26.29	0.00	2.417	9.16	1.00	2.0	98.0	0.0	2.26	1.47	0.89	0.87	1.66	16367	1284	11	294	0	0	0	logfile
✔	8HAi	34591	2024-11-18	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.66	0.0	0.04	26.20	0.00	2.246	15.30	0.09	2.6	97.4	0.0	1.43	1.68	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	8EY2	28666	2024-11-14	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.72	0.0	0.04	15.86	0.00	2.442	12.75	1.83	6.4	93.6	0.0	-0.98	1.12	0.79	0.81	2.22	4908	634	4	0	0	0	0	logfile
✔	8EXT	28662	2024-11-15	2022-10-25	4.6	4.06	4.52	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.3	0.003	0.70	0.0	0.04	12.81	0.00	2.200	13.78	0.00	8.0	92.0	0.0	-0.82	1.13	0.61	0.63	—	8846	1062	4	0	2	0	0	logfile
✔	8EXP	28658	2024-11-15	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.72	0.0	0.04	13.19	0.00	2.352	11.81	0.00	3.8	96.2	0.0	0.29	1.15	0.63	0.69	—	9024	1078	4	0	2	0	0	logfile
✔	8EXQ	28659	2024-11-15	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.68	0.0	0.04	12.72	0.00	2.446	13.67	0.00	4.7	95.3	0.0	-0.46	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	8EXR	28660	2024-11-14	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	12.16	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.72	0.0	0.04	16.61	0.00	2.088	12.13	3.37	3.4	96.6	0.0	0.69	0.98	0.53	0.67	0.84	5111	590	5	0	7	0	0	logfile
✔	8H9G	34566	2024-11-14	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.64	0.0	0.04	17.78	0.00	2.572	5.97	4.23	4.1	95.9	0.0	2.18	0.90	0.33	0.81	1.93	3381	421	3	0	0	0	0	logfile
✔	8EXS	28661	2024-11-15	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.72	0.0	0.04	13.00	0.00	2.074	13.32	0.00	4.5	95.5	0.0	0.35	2.11	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	8H9Q	34577	2024-11-16	2022-10-25	3.47	3.93	3.89	3.9	0.005	0.73	0.0	0.05	13.53	0.01	2.203	12.33	0.00	3.2	96.8	0.0	-3.02	0.62	0.80	2.13	3.9	0.006	0.97	1.0	0.04	16.62	0.01	1.794	15.30	3.59	1.5	98.5	0.0	1.72	1.34	0.64	0.82	1.50	12083	1596	19	0	0	0	0	logfile
✔	8H9K	34570	2024-11-14	2022-10-25	3.51	3.83	3.65	3.7	0.006	0.91	0.0	0.05	15.47	0.01	2.169	13.42	0.00	5.8	94.2	0.0	-2.34	0.39	0.77	1.95	3.8	0.004	0.77	0.0	0.04	17.18	0.00	2.396	9.10	2.54	3.4	96.6	0.0	2.82	1.20	0.39	0.77	1.87	3381	421	3	0	0	0	0	logfile
✔	8H9R	34578	2024-11-14	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.74	0.0	0.04	17.98	0.00	2.489	9.55	1.69	3.9	96.1	0.0	2.23	1.07	0.38	0.79	0.51	3381	421	3	0	0	0	0	logfile
✔	8H9J	34569	2024-11-16	2022-10-25	3.26	3.64	3.36	3.6	0.010	0.85	0.0	0.05	13.20	0.01	2.233	13.39	0.00	3.8	96.2	0.0	-3.26	0.64	0.81	2.37	3.6	0.003	0.66	0.0	0.04	16.27	0.00	2.511	9.56	2.47	1.7	98.3	0.0	2.01	1.00	0.59	0.80	1.80	12082	1596	19	0	0	0	0	logfile
✔	8EX9	28655	2024-11-14	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile
✔	8EXA	28656	2024-11-14	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.58	0.00	2.495	12.36	2.83	3.3	96.7	0.0	0.89	1.14	0.60	0.68	3.79	5539	341	4	139	0	0	0	logfile

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