Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EXP	28658	2024-11-15	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.72	0.0	0.04	13.19	0.00	2.352	11.81	0.00	3.8	96.2	0.0	0.29	1.15	0.63	0.69	—	9024	1078	4	0	2	0	0	logfile
✔	8H9Q	34577	2024-11-16	2022-10-25	3.47	3.93	3.89	3.9	0.005	0.73	0.0	0.05	13.53	0.01	2.203	12.33	0.00	3.2	96.8	0.0	-3.02	0.62	0.80	2.13	3.9	0.006	0.97	1.0	0.04	16.62	0.01	1.794	15.30	3.59	1.5	98.5	0.0	1.72	1.34	0.64	0.82	1.50	12083	1596	19	0	0	0	0	logfile
✔	8H9N	34574	2024-11-14	2022-10-25	3.56	3.82	3.61	3.7	0.007	0.88	0.0	0.05	15.25	0.01	2.178	14.62	0.00	5.6	94.4	0.0	-2.28	0.36	0.77	1.69	3.7	0.003	0.72	0.0	0.04	18.06	0.01	2.528	9.99	3.10	2.9	97.1	0.0	2.43	1.11	0.36	0.77	1.69	3381	421	3	0	0	0	0	logfile
✔	8BFB	16019	2024-11-14	2022-10-24	3.2	3.13	3.01	3.2	0.003	0.44	0.0	0.06	13.91	0.00	2.552	9.16	0.00	0.0	100.0	0.0	-3.20	0.49	0.83	5.20	3.2	0.004	0.51	0.0	0.05	17.21	0.00	2.631	5.39	1.43	1.4	98.6	0.0	-2.94	1.02	0.51	0.86	6.54	2860	380	10	0	0	0	0	logfile
✔	8H8X	34551	2024-11-17	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.003	0.59	0.0	0.04	13.07	0.00	2.273	4.85	0.53	5.9	94.1	0.0	-0.27	1.96	0.79	0.77	1.76	13418	850	1	0	0	0	6667	logfile
✔	8H95	34555	2024-11-16	2022-10-24	3.38	4.02	3.53	4.0	0.004	0.81	1.0	0.05	17.99	0.01	2.171	9.12	0.32	5.9	94.1	0.0	-0.70	0.70	0.74	1.18	4.0	0.003	0.68	0.0	0.04	18.55	0.00	2.356	6.96	3.20	5.2	94.8	0.0	-0.84	1.19	0.66	0.71	1.03	11098	1405	3	0	0	0	0	logfile
✔	8EX7	28653	2024-11-14	2022-10-24	3.53	3.77	3.48	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	3.8	0.003	0.59	0.0	0.04	15.33	0.00	2.583	6.83	3.28	2.5	97.5	0.0	2.10	0.31	0.59	0.75	1.18	3177	414	1	0	0	0	0	logfile
✔	8BFA	16018	2024-11-14	2022-10-24	3.0	3.05	3.02	3.3	0.002	0.39	0.0	0.05	13.94	0.00	2.592	6.46	0.00	0.0	100.0	0.0	-3.13	0.47	0.82	5.29	3.3	0.003	0.48	0.0	0.05	17.15	0.00	2.606	4.85	0.71	2.2	97.8	0.0	-2.39	1.32	0.51	0.88	6.16	2860	380	10	0	0	0	0	logfile
✔	8BF8	16016	2024-11-14	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	21.43	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	21.57	0.00	2.536	7.87	1.86	3.1	96.9	0.0	0.70	0.88	0.59	0.75	2.93	4686	302	2	111	0	0	0	logfile
✔	8H96	34556	2024-11-16	2022-10-24	2.78	3.40	2.90	3.3	0.004	0.69	1.0	0.05	16.70	0.01	2.225	5.12	1.52	5.3	94.7	0.0	-0.55	0.75	0.82	2.38	3.3	0.005	0.66	0.0	0.04	17.61	0.00	2.436	3.64	2.48	6.2	93.8	0.0	-0.52	0.30	0.73	0.81	2.12	11098	1405	3	0	0	0	0	logfile
✔	8EX8	28654	2024-11-14	2022-10-24	4.17	4.37	4.02	4.3	0.007	0.96	0.0	0.05	14.00	0.01	2.138	20.49	0.00	5.1	94.9	0.0	-0.72	0.56	0.74	—	4.4	0.003	0.64	0.0	0.04	13.96	0.00	2.553	11.49	0.00	2.0	98.0	0.0	1.01	0.58	0.53	0.71	—	3177	414	1	0	0	0	0	logfile
✔	8EX5	28651	2024-11-14	2022-10-24	3.47	3.76	3.31	3.7	0.004	0.71	0.0	0.04	12.11	0.00	2.141	9.78	0.00	2.2	97.8	0.0	0.88	0.48	0.70	2.43	3.7	0.003	0.58	0.0	0.04	14.43	0.00	2.582	5.90	1.19	2.5	97.5	0.0	2.31	0.30	0.48	0.71	1.91	3177	414	1	0	0	0	0	logfile
✔	8H94	34554	2024-11-16	2022-10-24	2.9	3.18	3.01	3.1	0.005	0.74	0.0	0.05	17.62	0.00	2.127	9.12	2.08	5.4	94.6	0.0	-0.56	0.73	0.84	2.28	3.1	0.003	0.60	0.0	0.04	17.85	0.00	2.412	5.84	3.52	4.9	95.1	0.0	0.03	0.43	0.69	0.81	2.08	11098	1405	3	0	0	0	0	logfile
✔	8H8C	34542	2024-11-18	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.004	0.71	0.0	0.05	16.31	0.00	2.331	6.84	4.26	15.1	84.9	0.0	-3.44	0.69	0.72	0.82	2.96	16940	2078	4	0	0	0	0	logfile
✔	8H8B	34541	2024-11-15	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.004	0.71	0.0	0.05	15.58	0.00	2.498	5.74	2.36	11.4	88.6	0.0	-1.82	0.62	0.74	0.85	3.71	8344	1027	1	0	0	0	0	logfile
✔	8H8D	34543	2024-11-14	2022-10-22	4.26	4.56	4.17	4.3	0.004	0.87	0.0	0.05	18.37	0.02	2.155	18.68	4.97	4.6	95.4	0.0	-0.02	0.62	0.79	—	4.3	0.003	0.69	0.0	0.04	14.64	0.00	2.561	11.58	0.00	5.6	94.4	0.0	-0.08	1.33	0.64	0.81	—	7054	856	3	0	0	0	0	logfile
✔	8BEW	16011	2024-11-20	2022-10-22	3.49	3.73	3.58	3.7	0.003	0.74	0.0	0.05	14.61	0.00	2.171	4.97	0.09	4.1	95.7	0.2	-1.10	0.73	0.74	1.44	3.7	0.002	0.59	0.0	0.04	16.55	0.00	2.460	5.77	1.16	4.2	95.7	0.1	0.08	0.49	0.72	0.82	0.97	21004	2704	12	0	24	0	0	logfile
✔	8H8A	34540	2024-11-15	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.007	0.84	0.0	0.05	15.80	0.01	2.349	5.78	2.22	14.9	85.0	0.1	-2.72	1.16	0.77	0.90	4.33	8454	1039	2	0	0	0	0	logfile
✔	8H8E	34544	2024-11-18	2022-10-22	3.81	4.25	3.95	4.1	0.003	0.65	0.0	0.04	17.90	0.00	2.210	15.16	0.06	9.2	90.8	0.0	-2.48	0.64	0.68	2.02	4.1	0.003	0.66	0.0	0.04	19.13	0.00	2.485	11.13	2.27	7.5	92.5	0.0	-1.88	0.49	0.68	0.77	1.61	15818	1723	7	75	0	0	0	logfile
✔	8EW0	28639	2024-11-17	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.003	0.50	0.0	0.04	18.43	0.00	2.476	5.28	3.93	1.5	98.4	0.1	2.66	0.87	0.69	0.91	3.65	13636	1747	6	0	0	0	0	logfile

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