Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EL8	28224	2024-11-14	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.43	0.0	0.04	15.26	0.00	2.627	1.59	0.68	1.6	98.4	0.0	1.81	0.28	0.66	0.84	1.38	4467	597	2	0	0	0	0	logfile
✔	8EL7	28223	2024-11-14	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.49	0.0	0.04	14.81	0.00	2.548	1.55	1.95	1.9	98.1	0.0	1.63	0.24	0.57	0.80	2.38	4562	604	3	0	0	5	0	logfile
✔	8GYP	34375	2024-11-19	2022-09-23	3.5	3.83	3.39	3.8	0.003	0.59	0.0	0.03	17.32	0.00	2.040	10.71	0.09	7.2	92.4	0.3	0.70	0.67	0.76	1.79	3.8	0.003	0.73	0.0	0.04	17.32	0.00	2.538	5.90	4.92	5.6	94.1	0.3	1.66	1.25	0.67	0.76	1.55	19538	2450	14	0	7	0	0	logfile
✔	8GYQ	34376	2024-11-19	2022-09-23	3.4	3.91	3.44	3.9	0.003	0.58	0.0	0.04	17.63	0.00	1.840	7.37	0.66	7.3	92.6	0.2	0.23	0.62	0.75	1.43	3.9	0.003	0.64	0.0	0.04	18.07	0.00	2.454	7.47	4.37	4.6	95.4	0.0	1.05	0.41	0.62	0.78	1.31	19712	2422	14	0	7	0	0	logfile
✔	8GYK	34372	2024-11-19	2022-09-22	3.14	3.32	3.21	3.5	0.003	0.73	0.0	0.04	15.84	0.00	2.003	13.16	0.05	6.4	92.9	0.7	-2.07	0.50	0.70	1.66	3.5	0.004	0.73	0.0	0.04	17.70	0.00	1.882	10.57	3.56	7.1	92.4	0.6	-1.48	0.76	0.51	0.77	1.31	18103	2325	16	0	16	0	0	logfile
✔	8GY7	34371	2024-11-14	2022-09-21	3.3	2.37	3.34	2.2	0.004	0.76	2.0	0.05	15.85	0.01	2.006	10.67	0.96	4.7	95.3	0.0	0.27	0.76	0.77	2.61	2.0	0.004	0.67	0.0	0.04	16.74	0.00	2.269	10.60	4.32	4.4	95.6	0.0	0.68	0.43	0.76	0.78	2.55	7661	968	7	0	1	0	0	logfile
✔	8GY2	34368	2024-11-16	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.63	0.0	0.04	16.99	0.00	2.212	4.80	1.89	5.8	94.2	0.0	-0.02	0.25	0.80	0.89	4.12	9943	1264	5	0	7	0	0	logfile
✔	8EKS	28212	2024-11-20	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8EKP	28209	2024-11-20	2022-09-21	2.75	2.30	2.90	2.8	0.004	0.87	0.0	0.04	14.70	0.01	2.269	3.50	0.00	1.3	98.7	0.0	-2.94	0.53	0.84	3.56	2.8	0.003	0.56	0.0	0.04	16.81	0.00	2.565	5.42	1.60	1.8	98.2	0.0	1.11	1.10	0.53	0.85	3.37	20448	2488	8	0	8	0	0	logfile
✔	8EKA	28196	2024-11-14	2022-09-20	3.7	4.02	3.72	3.9	0.003	0.68	0.0	0.04	17.36	0.00	2.209	7.61	0.26	12.3	87.4	0.3	-1.98	0.78	0.85	2.25	3.9	0.003	0.75	0.0	0.04	17.52	0.00	2.370	6.52	3.35	12.0	87.7	0.2	-2.10	0.34	0.78	0.85	2.47	7023	905	7	0	0	0	0	logfile
✔	8EKE	28200	2024-11-14	2022-09-20	3.36	3.79	3.34	3.7	0.002	0.45	0.0	0.04	10.50	0.00	2.313	5.20	2.71	2.5	97.2	0.3	-0.29	0.78	0.72	2.45	3.7	0.004	0.75	0.0	0.04	14.70	0.00	2.356	8.77	2.91	4.5	95.5	0.0	-0.60	1.10	0.78	0.73	1.60	4681	610	2	0	0	0	0	logfile
✔	8EKD	28199	2024-11-14	2022-09-20	3.6	3.11	3.47	3.0	0.005	0.88	0.0	0.05	19.66	0.01	2.190	21.00	1.77	6.3	93.7	0.0	-1.67	0.49	0.63	1.30	3.1	0.004	0.77	0.0	0.05	17.43	0.01	2.533	16.42	7.08	6.8	93.2	0.0	-1.24	1.35	0.50	0.64	1.47	3239	411	4	0	1	0	0	logfile
✔	8B4i	15849	2024-11-15	2022-09-20	3.32	3.85	3.38	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.003	0.68	0.0	0.04	13.92	0.00	2.516	5.87	1.58	1.9	98.1	0.0	1.51	1.02	0.60	0.82	2.88	8242	1026	14	0	9	0	0	logfile
✔	8EK1	28192	2024-11-16	2022-09-19	3.6	3.91	3.66	3.8	0.004	0.74	0.0	0.05	15.72	0.00	2.185	9.39	0.53	9.2	90.3	0.5	-1.95	0.80	0.83	2.83	3.8	0.004	0.72	0.0	0.04	16.40	0.00	2.426	6.58	2.85	11.4	88.6	0.0	-2.02	1.00	0.80	0.84	2.69	8497	1102	7	0	0	0	0	logfile
✔	8EJK	28185	2024-11-15	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.17	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.003	0.62	0.0	0.04	15.93	0.00	2.314	7.30	2.68	3.7	96.3	0.0	1.04	0.39	0.73	0.86	1.85	8594	1124	6	0	1	0	0	logfile
✔	8EJH	28182	2024-11-18	2022-09-16	3.71	4.24	3.87	4.0	0.021	1.83	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.004	0.81	0.0	0.04	14.14	0.00	2.402	8.71	2.92	5.4	94.6	0.0	-0.28	1.88	0.76	0.76	2.11	15186	1761	45	0	99	0	0	logfile
✔	8EJE	28179	2024-11-15	2022-09-16	3.69	3.95	3.70	3.9	0.023	2.14	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.004	0.98	0.0	0.05	15.38	0.00	2.401	11.36	4.52	9.7	90.3	0.0	-0.65	1.02	0.81	0.78	2.02	9426	1068	33	0	66	0	0	logfile
✔	8B3A	15824	2024-11-13	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8GW7	34304	2024-11-14	2022-09-16	3.3	3.48	3.35	3.8	0.004	0.79	0.0	0.06	14.00	0.01	2.220	5.74	0.39	1.3	98.7	0.0	1.51	0.61	0.78	1.67	3.7	0.003	0.65	0.0	0.04	15.60	0.00	2.612	5.74	3.27	2.0	98.0	0.0	2.46	1.31	0.61	0.79	1.63	7524	945	6	0	9	0	0	logfile
✔	8EJD	28178	2024-11-16	2022-09-16	3.8	4.33	3.84	4.1	0.022	1.83	0.0	0.17	17.20	0.02	2.400	2.31	0.00	4.7	95.3	0.0	-0.17	0.83	0.78	2.34	4.1	0.004	0.86	0.0	0.05	14.22	0.00	2.366	11.13	2.28	8.1	91.9	0.0	-0.04	1.90	0.83	0.78	2.07	9804	1086	36	0	87	0	0	logfile

• ← previous
• Page 174 of 424
• next →