Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EJi	28183	2024-11-16	2022-09-16	3.81	4.24	3.86	4.0	0.022	1.85	3.0	0.15	16.97	0.02	2.309	3.30	0.00	4.1	95.9	0.0	0.23	0.80	0.80	2.42	4.0	0.003	0.79	0.0	0.05	13.80	0.00	2.481	10.83	1.78	4.5	95.4	0.1	0.15	2.71	0.79	0.79	1.81	11023	1257	32	0	78	0	0	logfile
✔	8GW6	34303	2024-11-15	2022-09-16	3.3	3.39	3.36	3.7	0.004	0.60	0.0	0.05	12.88	0.00	2.397	20.00	0.65	2.2	97.8	0.0	0.70	0.59	0.80	2.71	3.7	0.003	0.61	0.0	0.04	15.26	0.00	2.464	5.27	0.65	3.0	97.0	0.0	1.04	0.96	0.58	0.80	1.46	8883	1101	6	0	6	0	0	logfile
✔	8GW7	34304	2024-11-14	2022-09-16	3.3	3.48	3.35	3.8	0.004	0.79	0.0	0.06	14.00	0.01	2.220	5.74	0.39	1.3	98.7	0.0	1.51	0.61	0.78	1.67	3.7	0.003	0.65	0.0	0.04	15.60	0.00	2.612	5.74	3.27	2.0	98.0	0.0	2.46	1.31	0.61	0.79	1.63	7524	945	6	0	9	0	0	logfile
✔	8B3J	15830	2024-11-14	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.35	0.00	2.448	4.30	3.24	5.6	94.4	0.0	-2.13	0.26	0.43	0.87	2.66	5688	718	3	0	0	0	0	logfile
✔	8B3A	15824	2024-11-13	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8EJH	28182	2024-11-18	2022-09-16	3.71	4.24	3.87	4.0	0.021	1.83	0.0	0.15	17.28	0.01	2.321	2.57	0.00	5.7	94.3	0.0	-0.18	0.78	0.78	2.12	4.0	0.004	0.81	0.0	0.04	14.14	0.00	2.402	8.71	2.92	5.4	94.6	0.0	-0.28	1.88	0.76	0.76	2.11	15186	1761	45	0	99	0	0	logfile
✔	8EiH	28156	2024-11-16	2022-09-15	3.04	3.30	3.11	3.2	0.004	0.62	0.0	0.04	14.90	0.00	2.234	5.51	0.27	4.8	95.2	0.0	-1.22	0.71	0.80	3.03	3.2	0.003	0.57	0.0	0.04	15.51	0.00	2.506	3.85	2.45	4.4	95.6	0.0	-0.41	1.14	0.73	0.82	2.95	11674	1564	11	0	12	0	0	logfile
✔	8Eii	28157	2024-11-16	2022-09-15	3.12	3.48	3.13	3.4	0.004	0.72	0.0	0.04	15.07	0.01	2.205	9.34	0.10	5.8	94.2	0.0	-2.07	0.70	0.75	2.75	3.4	0.003	0.61	0.0	0.04	15.75	0.00	2.368	6.57	2.76	6.0	94.0	0.0	-1.25	1.15	0.68	0.75	2.61	10451	1366	9	0	9	0	0	logfile
✔	8EiK	28159	2024-11-17	2022-09-15	3.19	3.52	3.30	3.4	0.003	0.69	1.0	0.05	15.51	0.00	2.133	8.72	0.39	6.4	93.6	0.0	-1.62	0.66	0.68	1.48	3.4	0.002	0.59	0.0	0.04	15.97	0.00	2.190	6.05	2.32	4.6	95.4	0.0	-0.65	0.42	0.67	0.71	1.36	13487	1809	13	0	12	0	0	logfile
✔	8GVK	32099	2024-11-14	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.81	0.0	0.05	15.21	0.00	2.587	8.00	3.49	5.8	93.4	0.9	-0.76	0.81	0.74	0.85	6.61	3567	476	8	0	0	19	0	logfile
✔	8GVH	34293	2024-11-17	2022-09-15	3.32	3.55	3.33	3.6	0.003	0.66	0.0	0.12	15.16	0.00	2.235	6.44	0.07	5.6	94.3	0.1	-0.39	0.63	0.80	1.54	3.6	0.003	0.60	0.0	0.04	16.80	0.00	2.506	4.68	2.19	5.7	94.2	0.1	0.50	0.35	0.58	0.79	1.75	12602	1576	4	0	2	0	0	logfile
✔	8EiT	28164	2024-11-15	2022-09-15	2.8	2.89	2.85	3.0	0.004	0.68	0.0	0.05	13.35	0.01	2.230	3.89	0.11	1.8	98.2	0.0	1.13	0.72	0.82	2.63	2.9	0.003	0.65	0.0	0.04	16.06	0.00	2.410	7.84	2.66	2.6	97.4	0.0	1.65	0.42	0.73	0.85	2.57	8578	1123	6	0	1	0	0	logfile
✔	8EiJ	28158	2024-11-15	2022-09-15	3.34	3.70	3.35	3.7	0.003	0.73	1.0	0.04	15.17	0.00	2.172	9.51	0.38	5.6	94.4	0.0	-1.92	0.64	0.68	1.97	3.6	0.003	0.60	0.0	0.04	16.29	0.00	2.396	6.34	2.30	5.3	94.7	0.0	-1.11	0.35	0.67	0.71	1.73	7813	1017	7	0	6	0	0	logfile
✔	8GVF	34292	2024-11-15	2022-09-15	3.09	3.29	3.08	3.3	0.005	0.64	0.0	0.04	14.00	0.01	2.306	4.41	0.11	3.9	95.8	0.3	0.79	0.66	0.83	2.36	3.3	0.003	0.53	0.0	0.04	15.45	0.00	2.496	3.68	1.37	3.6	96.2	0.2	1.63	0.27	0.60	0.82	1.97	8072	1022	2	0	0	0	0	logfile
✔	8EiR	28162	2024-11-14	2022-09-15	2.49	3.15	2.50	3.0	0.005	0.81	0.0	0.05	16.40	0.01	1.960	4.05	2.61	2.2	97.4	0.3	-1.27	0.86	0.84	4.26	3.0	0.003	0.60	0.0	0.04	16.09	0.00	2.612	3.11	1.12	2.4	97.6	0.0	0.04	0.57	0.84	0.91	4.30	4870	632	4	0	0	0	0	logfile
✔	8GUY	34281	2024-11-17	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.68	0.0	0.04	13.94	0.00	2.500	8.37	0.25	7.7	92.3	0.0	-2.22	1.64	0.84	0.80	—	14222	1762	6	0	0	0	0	logfile
✔	8EHR	28150	2024-11-14	2022-09-14	3.2	2.95	3.03	3.1	0.003	0.55	0.0	0.05	13.08	0.00	2.374	2.29	0.00	0.0	100.0	0.0	1.82	0.58	0.85	3.24	3.1	0.002	0.49	0.0	0.04	15.66	0.00	2.559	3.78	2.56	0.9	99.1	0.0	1.13	1.16	0.58	0.87	3.59	7350	1022	7	0	0	0	0	logfile
✔	8GVA	34289	2024-11-15	2022-09-14	3.25	3.43	3.24	3.4	0.004	0.68	0.0	0.04	14.13	0.00	2.259	5.49	0.00	5.6	94.4	0.0	-0.61	0.64	0.81	2.22	3.4	0.003	0.60	0.0	0.04	16.33	0.00	2.504	5.31	2.05	5.6	94.4	0.0	0.85	0.36	0.60	0.81	1.56	8072	1022	2	0	0	0	0	logfile
✔	8EHS	28151	2024-11-14	2022-09-14	3.3	2.87	3.21	3.3	0.002	0.47	0.0	0.04	14.12	0.00	2.082	3.04	0.00	1.3	98.7	0.0	1.50	0.54	0.80	3.22	3.3	0.005	0.62	0.0	0.05	15.71	0.00	2.497	5.21	3.37	1.3	98.7	0.0	0.20	0.48	0.54	0.83	2.78	7546	1015	7	0	0	0	0	logfile
✔	8EHX	28154	2024-11-14	2022-09-14	3.6	3.90	3.67	3.9	0.005	0.80	0.0	0.05	17.02	0.01	2.214	13.59	0.00	8.5	91.3	0.2	0.14	0.58	0.79	0.78	3.9	0.003	0.70	0.0	0.04	17.71	0.00	2.601	8.68	3.74	6.6	93.3	0.2	1.21	1.53	0.56	0.78	1.01	5153	631	1	0	0	0	0	logfile

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