Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YL3	33902	2024-11-14	2022-07-25	3.2	3.58	3.19	3.5	0.008	2.13	0.0	0.06	10.32	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.004	0.69	0.0	0.04	13.56	0.00	2.559	3.46	4.32	6.4	93.6	0.0	-4.59	1.63	0.43	0.76	5.29	2958	396	12	0	0	0	0	logfile
✔	8DTF	27696	2024-11-17	2022-07-25	3.7	3.84	3.71	3.7	0.003	0.72	0.0	0.04	11.94	0.01	2.250	8.95	0.00	4.4	95.6	0.0	0.35	0.83	0.79	2.41	3.7	0.003	0.62	0.0	0.04	14.44	0.00	2.564	7.64	1.68	1.9	98.1	0.0	2.56	1.36	0.85	0.84	1.66	12414	1606	2	0	0	0	0	logfile
✔	8DTG	27697	2024-11-16	2022-07-25	3.9	3.99	3.88	3.9	0.004	0.63	0.0	0.04	12.36	0.01	2.136	8.01	0.00	5.6	94.4	0.0	0.05	0.81	0.80	2.03	3.9	0.003	0.71	0.0	0.04	14.66	0.00	2.490	9.90	1.42	2.5	97.5	0.0	1.99	1.01	0.82	0.83	1.27	11451	1539	2	0	0	0	0	logfile
✔	8DTH	27698	2024-11-16	2022-07-25	3.6	3.70	3.53	3.6	0.003	0.60	0.0	0.04	12.28	0.01	2.196	3.90	0.00	5.5	94.5	0.0	-0.11	0.84	0.83	2.66	3.6	0.003	0.61	0.0	0.04	14.18	0.00	2.393	6.67	1.35	2.9	97.1	0.0	2.65	0.40	0.85	0.84	2.27	11153	1437	2	0	0	0	0	logfile
✔	7YL0	33901	2024-11-14	2022-07-25	3.2	3.47	3.15	3.4	0.015	2.44	0.0	0.11	14.13	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.004	0.75	0.0	0.04	16.35	0.00	2.536	5.88	2.47	9.7	90.3	0.0	-4.54	1.67	0.44	0.78	5.58	2958	396	12	0	0	0	0	logfile
✔	8DTK	27703	2024-11-14	2022-07-25	3.77	3.96	3.71	4.0	0.005	0.79	0.0	0.09	16.06	0.01	2.096	4.32	0.00	4.5	95.5	0.0	-2.29	0.63	0.71	2.78	4.0	0.003	0.66	0.0	0.09	15.71	0.00	2.393	6.92	1.04	8.8	91.2	0.0	-2.23	0.51	0.64	0.73	2.59	6914	449	4	0	2	0	3363	logfile
✔	8DTB	27695	2024-11-17	2022-07-25	3.14	3.27	3.11	3.2	0.003	0.62	0.0	0.04	18.08	0.00	2.175	9.05	0.99	1.9	98.1	0.0	1.18	0.66	0.74	0.59	3.2	0.003	0.60	0.0	0.04	17.27	0.00	2.347	7.82	4.70	2.4	97.6	0.0	0.99	0.46	0.68	0.79	1.31	13724	1765	9	0	7	0	0	logfile
✔	7YL7	33903	2024-11-14	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	14.87	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.006	0.63	0.0	0.04	14.00	0.00	2.559	4.80	2.16	7.1	92.9	0.0	-5.10	0.74	0.44	0.77	5.41	2988	402	12	0	0	0	0	logfile
✔	7YKW	33897	2024-11-13	2022-07-25	3.6	4.09	3.10	4.0	0.010	1.66	0.0	0.09	11.46	0.00	2.538	10.73	0.00	3.9	96.1	0.0	-3.01	0.63	0.78	4.01	4.0	0.006	0.76	0.0	0.04	13.75	0.00	2.542	8.85	2.40	1.3	98.7	0.0	-4.39	1.50	0.63	0.76	4.11	1908	256	8	0	0	0	0	logfile
✔	8DT3	27690	2024-11-14	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.67	0.0	0.04	17.52	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.71	0.0	0.05	15.51	0.00	2.488	8.41	3.11	6.9	93.1	0.0	-0.47	0.41	0.79	0.85	2.82	3821	485	4	0	3	0	0	logfile
✔	8AHX	15452	2024-11-17	2022-07-24	3.11	3.79	3.18	3.6	0.007	0.92	0.0	0.22	19.65	0.00	2.203	5.77	0.71	5.1	94.7	0.3	0.91	0.77	0.89	3.08	3.6	0.004	0.64	0.0	0.04	14.01	0.00	2.422	5.81	2.22	5.4	94.5	0.1	1.37	0.91	0.76	0.88	2.51	12687	1608	13	0	24	0	0	logfile
✔	7YKS	33896	2024-11-19	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.004	0.80	0.0	0.04	16.62	0.00	2.364	7.21	1.33	4.4	95.6	0.0	-0.50	2.17	0.60	0.80	1.50	18984	2364	4	0	0	0	0	logfile
✔	7YK8	33890	2024-11-14	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.002	0.60	0.0	0.05	16.68	0.00	2.621	7.22	5.77	5.6	94.4	0.0	-2.79	1.14	0.43	0.81	2.65	3108	450	12	0	0	0	0	logfile
✔	7YKD	33891	2024-11-15	2022-07-22	2.81	3.29	2.94	3.2	0.009	0.86	0.0	0.06	14.19	0.00	2.118	15.46	0.10	5.0	95.0	0.0	-0.18	0.70	0.83	4.27	3.2	0.003	0.70	0.0	0.04	15.11	0.00	2.472	8.15	1.98	3.6	96.4	0.0	0.70	0.94	0.63	0.81	3.06	8965	1133	7	0	5	0	0	logfile
✔	8DSP	27657	2024-11-14	2022-07-22	3.3	3.95	3.29	3.7	0.005	0.79	0.0	0.05	12.78	0.00	2.147	13.79	0.47	8.9	90.5	0.6	-1.65	0.69	0.65	0.69	3.7	0.004	0.63	0.0	0.04	15.32	0.00	2.171	11.21	1.65	10.3	89.3	0.4	-1.38	2.23	0.74	0.81	2.59	7745	490	3	0	0	0	3848	logfile
✔	8DSA	27687	2024-11-16	2022-07-21	3.48	3.75	3.47	3.7	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.06	0.53	2.6	97.4	0.0	0.06	0.59	0.63	1.34	3.7	0.003	0.68	0.0	0.04	17.25	0.00	2.487	11.37	4.41	2.6	97.4	0.0	1.47	2.75	0.61	0.69	0.71	12039	1418	14	0	4	6	0	logfile
✔	8DS6	27684	2024-11-16	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.002	0.56	0.0	0.04	11.64	0.01	2.466	5.43	0.00	2.1	97.9	0.0	1.90	1.10	0.85	0.62	—	10135	669	2	0	0	0	5107	logfile
✔	8DS9	27686	2024-11-16	2022-07-21	3.17	3.61	3.26	3.6	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.01	0.53	2.6	97.4	0.0	0.06	0.57	0.61	1.30	3.6	0.004	0.62	0.0	0.04	17.15	0.00	2.455	10.13	4.72	2.9	97.1	0.0	1.35	1.91	0.56	0.67	0.89	12039	1418	14	0	4	6	0	logfile
✔	7YK1	33883	2024-11-17	2022-07-21	3.08	2.99	2.80	3.0	0.006	0.69	0.0	0.05	20.08	0.00	2.029	5.53	0.26	5.2	94.0	0.8	-1.48	0.75	0.89	3.82	3.0	0.002	0.65	0.0	0.04	19.30	0.00	1.991	3.90	2.07	4.5	94.8	0.7	0.32	1.09	0.72	0.88	3.39	14364	1836	12	0	24	0	0	logfile
✔	8DRN	27678	2024-11-14	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.004	0.80	0.0	0.05	13.95	0.00	2.498	20.93	0.00	5.5	94.4	0.1	-2.36	1.87	0.59	0.73	—	6578	811	2	0	0	0	0	logfile

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