Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AFL	15401	2024-11-14	2022-07-18	4.4	3.03	4.24	2.2	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.68	0.25	8.4	91.6	0.0	-3.48	0.59	0.59	—	2.1	0.004	0.75	0.0	0.04	15.48	0.00	2.408	12.80	0.00	5.5	94.5	0.0	-1.26	0.76	0.59	0.58	—	3921	505	6	0	0	0	0	logfile
✔	8AFM	15402	2024-11-15	2022-07-18	4.8	3.13	4.72	3.9	0.004	0.74	0.0	0.04	15.27	0.00	2.153	18.43	0.25	8.2	91.8	0.0	-3.48	0.46	0.51	—	3.0	0.003	0.81	0.0	0.04	15.70	0.01	2.330	13.56	0.00	5.9	94.1	0.0	-1.07	2.14	0.49	0.58	—	7842	1010	12	0	0	0	0	logfile
✔	7YiX	33865	2024-11-16	2022-07-18	2.96	3.52	3.10	3.4	0.003	0.51	0.0	0.04	13.44	0.00	2.001	3.35	0.00	3.6	96.4	0.0	-0.34	0.63	0.78	3.94	3.5	0.002	0.49	0.0	0.04	15.38	0.00	2.092	3.49	1.54	2.8	97.2	0.0	-0.16	1.14	0.64	0.80	3.53	11080	1416	10	0	20	0	0	logfile
✔	8DPZ	27644	2024-11-14	2022-07-18	3.38	3.59	2.04	3.5	0.004	0.77	0.0	0.05	13.01	0.01	2.363	1.84	0.00	3.6	96.4	0.0	-2.09	0.74	0.80	3.86	3.5	0.003	0.65	0.0	0.04	14.93	0.00	2.542	4.61	2.22	3.6	96.4	0.0	-1.20	1.14	0.75	0.83	3.20	3326	420	4	0	2	0	0	logfile
✔	8AFE	15395	2024-11-14	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.66	0.0	0.04	16.55	0.00	2.512	10.74	4.44	4.5	95.5	0.0	0.53	0.40	0.62	0.69	1.13	6785	880	10	0	0	0	0	logfile
✔	8DPT	27642	2024-11-17	2022-07-17	4.0	4.13	3.96	4.1	0.004	1.20	2.0	0.06	14.57	0.01	2.026	16.97	0.41	5.5	93.9	0.6	-0.83	0.64	0.68	—	4.1	0.003	0.76	0.0	0.04	15.22	0.01	2.526	9.93	1.91	4.3	95.7	0.0	0.32	0.62	0.70	0.76	—	13550	1714	12	0	14	0	0	logfile
✔	8DPS	27641	2024-11-16	2022-07-17	3.47	3.80	3.59	3.8	0.008	1.40	4.0	0.08	14.65	0.01	2.033	19.50	0.52	5.7	94.2	0.2	-0.57	0.68	0.72	1.72	3.8	0.004	0.78	0.0	0.05	15.53	0.00	2.514	9.10	2.52	3.6	96.4	0.0	0.18	0.51	0.68	0.74	1.53	10610	1324	12	0	14	0	0	logfile
✔	7YiM	33861	2024-11-14	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.004	0.69	0.0	0.04	17.93	0.00	2.497	8.56	1.36	3.4	96.6	0.0	0.75	1.26	0.64	0.66	0.87	4657	592	1	0	0	0	0	logfile
✔	7YiJ	33860	2024-11-20	2022-07-16	3.8	4.24	3.93	4.1	0.004	0.92	0.0	0.05	14.45	0.01	2.135	19.50	0.00	13.3	85.3	1.4	-2.71	0.57	0.71	1.54	4.1	0.004	0.80	0.0	0.05	17.22	0.00	2.509	16.06	2.94	13.1	85.8	1.1	-2.09	0.81	0.58	0.69	1.61	21313	2640	5	0	1	0	0	logfile
✔	7YiH	33859	2024-11-20	2022-07-16	3.5	3.85	3.58	3.8	0.004	0.78	0.0	0.05	14.23	0.01	2.066	16.72	0.00	13.9	85.0	1.1	-2.65	0.61	0.68	1.55	3.8	0.004	0.79	0.0	0.05	16.62	0.01	2.449	12.74	2.90	13.4	85.5	1.1	-2.29	0.95	0.63	0.72	1.62	21321	2640	8	0	5	4	0	logfile
✔	8AFA	15393	2024-11-15	2022-07-16	3.16	3.52	3.20	3.5	0.003	0.48	0.0	0.04	14.99	0.00	2.223	6.23	0.53	1.8	98.2	0.0	0.26	0.63	0.83	2.67	3.5	0.003	0.50	0.0	0.04	15.27	0.00	2.537	8.54	2.01	1.6	98.4	0.0	2.70	0.34	0.58	0.81	2.11	9008	1208	6	0	0	0	0	logfile
✔	8DPH	27635	2024-11-15	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.56	0.0	0.04	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.60	0.0	0.04	13.94	0.00	2.538	4.64	1.95	2.9	97.1	0.0	1.65	1.05	0.78	0.77	2.22	8182	1093	6	0	3	0	0	logfile
✔	8DPi	27636	2024-11-15	2022-07-15	3.4	2.28	3.42	2.1	0.003	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.65	0.0	0.04	14.29	0.00	2.543	5.98	3.54	3.2	96.8	0.0	1.24	0.60	0.75	0.73	2.45	8150	1093	6	0	2	0	0	logfile
✔	8DPG	27634	2024-11-15	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.004	0.63	0.0	0.04	13.52	0.00	2.535	4.84	1.83	2.7	97.3	0.0	1.76	1.10	0.76	0.73	1.65	8162	1093	6	0	2	0	0	logfile
✔	7Yi8	33853	2024-11-14	2022-07-15	2.7	2.97	2.76	2.9	0.003	0.61	0.0	0.04	14.73	0.00	2.179	9.92	0.00	4.0	96.0	0.0	-0.52	0.69	0.74	2.24	2.9	0.002	0.58	0.0	0.04	17.65	0.00	2.523	8.11	2.25	3.4	96.6	0.0	-0.62	0.96	0.68	0.77	1.94	5225	635	5	0	0	0	0	logfile
✔	8DPF	27633	2024-11-15	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.66	0.0	0.04	14.67	0.00	2.579	3.52	2.32	2.3	97.7	0.0	1.16	1.35	0.80	0.80	3.26	8160	1093	6	0	2	0	0	logfile
✔	8DPL	27637	2024-11-20	2022-07-15	2.53	3.55	2.56	3.0	0.002	0.48	0.0	0.04	9.41	0.00	2.277	3.90	0.00	2.5	97.5	0.0	1.13	0.90	0.87	4.07	3.1	0.004	0.82	0.0	0.04	13.37	0.01	2.467	6.10	1.46	2.9	97.1	0.0	0.55	1.57	0.89	0.88	3.98	16872	2163	21	0	21	0	0	logfile
✔	7Yi9	33854	2024-11-14	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.61	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.62	0.0	0.04	17.64	0.00	2.118	8.39	3.99	4.4	95.6	0.0	-0.40	1.96	0.64	0.78	3.03	5226	634	5	0	1	0	0	logfile
✔	7Yi2	33849	2024-11-16	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.003	0.57	0.0	0.04	19.07	0.00	2.052	7.40	2.90	7.3	92.7	0.0	-0.20	0.32	0.75	0.77	2.09	12140	1397	9	33	5	0	0	logfile
✔	8AEX	15388	2024-11-14	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.006	0.84	0.0	0.06	17.76	0.00	2.375	11.04	4.04	7.8	92.2	0.0	-2.46	0.37	0.49	0.87	4.79	4665	680	10	0	0	0	0	logfile

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