Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AEX	15388	2024-11-14	2022-07-14	2.76	2.87	2.67	2.8	0.009	1.16	0.0	0.06	16.57	0.00	2.313	12.81	3.19	8.5	91.5	0.0	-3.01	0.49	0.85	5.31	2.8	0.006	0.84	0.0	0.06	17.76	0.00	2.375	11.04	4.04	7.8	92.2	0.0	-2.46	0.37	0.49	0.87	4.79	4665	680	10	0	0	0	0	logfile
✔	7Yi0	33845	2024-11-17	2022-07-14	3.2	3.31	3.15	3.3	0.003	0.57	0.0	0.04	15.67	0.00	2.105	8.46	0.93	5.7	94.3	0.0	-0.27	0.62	0.62	1.43	3.3	0.003	0.61	0.0	0.04	17.35	0.00	2.086	7.38	2.46	5.9	94.1	0.0	0.81	1.01	0.68	0.74	1.76	13430	1638	9	0	7	0	0	logfile
✔	7Yi2	33849	2024-11-16	2022-07-14	3.4	2.75	3.37	2.7	0.003	0.59	0.0	0.04	18.25	0.01	2.062	9.71	0.23	6.9	93.1	0.0	-0.99	0.75	0.77	2.10	2.7	0.003	0.57	0.0	0.04	19.07	0.00	2.052	7.40	2.90	7.3	92.7	0.0	-0.20	0.32	0.75	0.77	2.09	12140	1397	9	33	5	0	0	logfile
✔	8DP5	27630	2024-11-18	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.002	0.52	0.0	0.03	14.33	0.00	2.490	2.25	0.11	1.5	98.5	0.0	3.02	2.87	0.71	0.80	2.48	17780	1145	6	0	0	0	8916	logfile
✔	7Yi3	33850	2024-11-16	2022-07-14	3.3	2.58	3.25	3.1	0.003	0.52	0.0	0.04	16.30	0.01	2.014	7.86	0.16	6.1	93.9	0.0	-0.30	0.73	0.77	2.60	2.5	0.003	0.53	0.0	0.04	16.97	0.00	2.041	6.71	2.67	6.3	93.7	0.0	0.38	0.27	0.73	0.78	2.07	11425	1392	7	0	5	0	0	logfile
✔	8DoU	27623	2024-11-17	2022-07-14	3.54	3.80	3.52	3.8	0.003	0.63	0.0	0.04	14.70	0.00	2.233	7.01	0.34	4.7	95.3	0.0	0.61	0.70	0.76	1.40	3.8	0.003	0.67	0.0	0.04	16.52	0.00	2.420	6.42	3.53	5.5	94.5	0.0	-0.14	0.55	0.73	0.80	1.53	10666	1300	6	0	2	0	0	logfile
✔	7YHK	33831	2024-11-17	2022-07-13	3.14	3.38	3.17	3.4	0.007	0.99	0.0	0.06	14.13	0.01	2.022	5.30	0.76	5.0	94.8	0.2	-3.95	0.54	0.74	4.42	3.4	0.007	0.76	1.0	0.04	15.68	0.01	0.625	7.19	1.84	3.8	96.2	0.0	-1.37	0.42	0.70	0.88	4.09	14502	1812	15	0	18	0	0	logfile
✔	8Do6	27593	2024-11-17	2022-07-12	3.1	3.31	3.16	3.3	0.005	0.68	0.0	0.04	18.00	0.00	2.146	16.58	0.62	6.3	93.2	0.4	-1.21	0.69	0.77	1.74	3.3	0.006	1.04	2.0	0.05	18.81	0.00	1.968	17.49	2.26	6.5	93.2	0.4	-0.95	0.41	0.68	0.77	1.65	12980	1450	9	61	0	0	0	logfile
✔	8DNV	27581	2024-11-14	2022-07-12	3.03	3.41	3.04	3.4	0.004	0.59	0.0	0.04	11.81	0.01	2.276	7.53	0.00	2.5	97.5	0.0	1.82	0.49	0.76	3.80	3.3	0.003	0.52	0.0	0.04	13.83	0.00	2.547	4.94	0.67	2.3	97.7	0.0	2.55	0.39	0.56	0.82	3.09	4157	535	3	0	0	0	0	logfile
✔	8Do2	27588	2024-11-14	2022-07-12	2.95	3.24	2.95	3.2	0.005	0.73	0.0	0.04	12.56	0.00	2.254	7.21	0.22	1.7	98.3	0.0	2.17	0.58	0.80	2.71	3.2	0.003	0.55	0.0	0.04	14.92	0.00	2.617	6.86	1.11	1.7	98.3	0.0	2.76	0.31	0.58	0.82	1.95	4226	541	4	0	1	0	0	logfile
✔	8DNW	27582	2024-11-14	2022-07-12	3.4	3.74	3.38	3.7	0.003	0.51	0.0	0.04	12.46	0.00	1.976	5.57	0.00	1.4	98.6	0.0	2.85	0.58	0.79	1.72	3.7	0.003	0.57	0.0	0.04	14.15	0.00	2.578	5.33	1.15	1.6	98.4	0.0	3.19	1.10	0.56	0.80	1.70	4060	528	3	0	0	0	0	logfile
✔	7YH6	33820	2024-11-14	2022-07-12	3.4	3.90	3.35	3.7	0.005	0.64	0.0	0.05	13.19	0.00	2.161	8.14	0.00	7.1	92.7	0.2	-0.87	0.66	0.86	3.92	3.7	0.003	0.67	0.0	0.05	14.70	0.00	2.529	5.68	1.39	5.7	94.3	0.0	-0.63	0.74	0.66	0.86	3.16	3343	430	4	0	1	0	0	logfile
✔	8Do4	27590	2024-11-19	2022-07-12	3.2	3.38	3.21	3.5	0.005	0.81	0.0	0.05	16.40	0.00	2.056	12.09	1.54	3.4	96.6	0.0	-0.40	0.69	0.68	1.37	3.5	0.005	0.83	0.0	0.05	17.04	0.00	2.242	11.03	3.22	3.8	96.2	0.0	-0.36	0.71	0.71	0.72	1.40	20163	2625	6	0	0	0	0	logfile
✔	8AE1	15378	2024-11-20	2022-07-12	3.25	3.42	3.19	3.3	0.002	0.47	0.0	0.04	12.79	0.00	2.165	3.58	0.00	2.7	97.3	0.0	-1.01	0.77	0.87	4.39	3.3	0.006	0.62	0.0	0.05	14.19	0.00	2.185	3.03	1.23	3.8	96.2	0.0	-0.54	0.26	0.78	0.89	3.73	21504	2859	6	0	18	0	0	logfile
✔	8Do3	27589	2024-11-14	2022-07-12	3.22	3.50	3.23	3.5	0.004	0.62	0.0	0.04	13.22	0.02	2.452	6.81	0.00	2.3	97.7	0.0	2.39	0.54	0.79	2.25	3.5	0.004	0.62	0.0	0.04	14.50	0.00	2.604	7.40	2.01	2.5	97.5	0.0	2.75	1.11	0.55	0.81	1.89	4185	534	4	0	1	0	0	logfile
✔	8ADU	15370	2024-11-14	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.005	0.78	0.0	0.05	17.21	0.00	2.526	14.33	6.09	12.2	87.8	0.0	-4.26	1.13	0.50	0.81	3.01	3460	495	5	0	0	0	0	logfile
✔	8DNR	27577	2024-11-16	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.05	15.50	0.00	2.532	3.36	1.65	2.7	97.3	0.0	0.79	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	7YGD	33816	2024-11-15	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.78	0.0	0.04	25.43	0.01	1.825	28.90	0.00	0.0	0.0	0.0	—	2.07	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	8DNF	27565	2024-11-16	2022-07-11	3.38	3.71	3.49	3.9	0.004	0.69	0.0	0.04	15.96	0.01	2.266	4.74	0.79	2.8	97.2	0.0	-0.81	0.56	0.81	1.68	3.9	0.007	0.76	0.0	0.05	16.61	0.00	1.825	3.29	2.77	5.8	94.2	0.0	-0.92	1.07	0.63	0.88	1.68	11812	1496	8	0	12	0	0	logfile
✔	8DNE	27564	2024-11-16	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.7	0.005	0.68	0.0	0.05	16.63	0.00	1.894	9.57	3.04	5.2	94.8	0.0	0.13	1.23	0.69	0.78	1.61	10281	1251	6	0	4	0	0	logfile

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