Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ADW	15372	2024-11-14	2022-07-11	2.95	2.93	2.87	3.0	0.009	1.46	0.0	0.07	22.42	0.01	2.469	8.01	23.33	7.7	92.3	0.0	-4.02	0.51	0.80	4.38	2.9	0.007	0.83	0.0	0.05	20.18	0.00	2.517	12.29	3.77	8.8	91.2	0.0	-3.48	1.27	0.52	0.83	4.14	6920	990	10	0	0	0	0	logfile
✔	8ADU	15370	2024-11-14	2022-07-11	3.24	2.85	2.78	3.3	0.007	0.82	0.0	0.07	15.52	0.00	2.296	20.22	0.00	11.3	88.7	0.0	-4.91	0.52	0.82	3.23	3.3	0.005	0.78	0.0	0.05	17.21	0.00	2.526	14.33	6.09	12.2	87.8	0.0	-4.26	1.13	0.50	0.81	3.01	3460	495	5	0	0	0	0	logfile
✔	7YGN	33817	2024-11-14	2022-07-11	3.0	3.26	3.08	3.3	0.006	0.85	0.0	0.05	15.42	0.01	1.892	3.34	0.00	2.7	97.3	0.0	0.11	0.69	0.77	2.97	3.3	0.003	0.56	0.0	0.04	16.82	0.00	1.977	5.05	1.64	3.1	96.9	0.0	0.99	0.57	0.65	0.80	2.62	6133	739	3	9	2	0	0	logfile
✔	8DNH	27572	2024-11-16	2022-07-11	2.99	3.18	3.05	3.2	0.006	0.88	0.0	0.06	17.00	0.01	2.150	8.51	0.16	3.8	96.2	0.0	0.38	0.58	0.74	1.96	3.1	0.004	0.67	0.0	0.04	18.04	0.00	1.885	4.75	2.69	3.2	96.8	0.0	0.44	1.14	0.67	0.83	2.22	11796	1496	8	0	12	0	0	logfile
✔	8DNR	27577	2024-11-16	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.05	15.50	0.00	2.532	3.36	1.65	2.7	97.3	0.0	0.79	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	8ADS	15369	2024-11-14	2022-07-11	3.05	2.91	2.80	3.2	0.004	0.49	0.0	0.06	13.38	0.00	2.218	11.86	0.00	1.4	98.6	0.0	-3.19	0.48	0.79	5.21	3.2	0.005	0.66	0.0	0.05	16.65	0.00	2.611	9.98	3.46	3.5	96.5	0.0	-3.64	0.54	0.49	0.82	5.76	5170	750	10	0	0	0	0	logfile
✔	8DNE	27564	2024-11-16	2022-07-11	3.5	3.77	3.53	3.8	0.004	0.65	0.0	0.04	14.83	0.00	1.785	9.38	0.00	4.9	95.1	0.0	-0.37	0.71	0.78	2.45	3.7	0.005	0.68	0.0	0.05	16.63	0.00	1.894	9.57	3.04	5.2	94.8	0.0	0.13	1.23	0.69	0.78	1.61	10281	1251	6	0	4	0	0	logfile
✔	8DNS	27579	2024-11-16	2022-07-11	3.22	3.05	3.26	3.1	0.006	1.46	0.0	0.09	11.07	0.01	2.425	5.60	3.33	2.4	97.6	0.0	-0.08	0.66	0.78	2.68	3.1	0.005	0.66	0.0	0.05	15.01	0.00	2.543	8.82	2.31	3.3	96.7	0.0	-0.25	1.22	0.68	0.83	2.96	10092	1332	4	0	0	0	0	logfile
✔	8DNG	27566	2024-11-16	2022-07-11	3.0	3.19	3.01	3.2	0.004	0.61	0.0	0.05	15.29	0.00	2.029	11.14	2.15	3.2	96.8	0.0	0.46	0.53	0.67	2.03	3.2	0.002	0.57	0.0	0.05	16.39	0.00	2.539	6.37	2.23	2.1	97.9	0.0	0.06	0.51	0.65	0.77	1.87	10218	1308	6	0	12	0	0	logfile
✔	8DNo	27575	2024-11-18	2022-07-11	3.4	3.13	3.46	3.2	0.013	1.45	0.0	0.06	13.09	0.01	2.298	40.43	4.71	10.4	87.0	2.6	-4.22	0.63	0.74	1.54	3.2	0.003	0.72	0.0	0.04	16.76	0.00	2.466	12.16	3.60	4.6	95.4	0.0	-0.53	1.73	0.60	0.76	1.29	15160	1972	4	0	0	0	0	logfile
✔	8DNM	27574	2024-11-17	2022-07-11	2.76	3.58	2.88	3.4	0.006	0.85	4.0	0.05	12.93	0.01	2.217	8.35	0.86	3.6	96.4	0.0	-1.12	0.83	0.80	3.99	3.4	0.003	0.57	0.0	0.04	14.67	0.00	2.517	5.04	0.49	3.0	97.0	0.0	0.71	1.21	0.83	0.87	2.97	14880	1932	4	0	0	0	0	logfile
✔	8DN2	27552	2024-11-18	2022-07-10	3.9	4.27	4.08	4.3	0.003	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.003	0.77	0.0	0.05	14.78	0.00	2.442	11.13	5.20	5.1	94.9	0.0	0.28	0.98	0.58	0.80	1.74	14102	1696	12	0	40	0	0	logfile
✔	8DN8	27556	2024-11-17	2022-07-10	3.7	4.03	3.79	4.0	0.004	0.62	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.005	0.97	1.0	0.04	16.00	0.00	2.168	11.40	2.76	5.8	94.2	0.0	-0.30	0.57	0.73	0.83	1.03	10638	1300	6	0	2	0	0	logfile
✔	8DN5	27555	2024-11-18	2022-07-10	3.63	3.95	3.73	3.9	0.004	0.73	0.0	0.05	11.89	0.01	0.981	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.003	0.67	0.0	0.04	14.55	0.00	2.482	7.29	2.32	4.9	95.0	0.2	-0.12	0.95	0.62	0.83	1.85	14081	1689	13	0	47	0	0	logfile
✔	8DN4	27554	2024-11-17	2022-07-10	4.1	4.45	4.26	4.3	0.004	0.72	0.0	0.05	13.55	0.00	1.353	18.54	0.40	5.8	93.9	0.3	-0.28	0.63	0.81	—	4.3	0.003	0.77	0.0	0.05	13.44	0.00	2.499	13.38	0.00	5.8	94.0	0.2	-0.38	0.55	0.63	0.81	—	13817	1682	10	0	20	0	0	logfile
✔	7YFX	33800	2024-11-14	2022-07-09	3.4	3.66	3.48	3.6	0.005	0.79	0.0	0.05	16.96	0.01	1.969	7.14	0.45	2.4	97.6	0.0	-0.16	0.64	0.71	1.95	3.6	0.003	0.63	0.0	0.04	17.40	0.00	1.950	8.34	3.56	3.0	97.0	0.0	0.39	1.26	0.67	0.77	1.87	6319	746	4	15	2	0	0	logfile
✔	7YG0	33803	2024-11-17	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	16.20	0.00	2.467	23.24	2.80	5.0	94.9	0.1	-0.78	2.16	0.67	0.73	0.21	13336	1708	2	0	0	0	0	logfile
✔	7YFY	33801	2024-11-14	2022-07-09	3.4	3.81	3.42	3.8	0.005	0.86	1.0	0.05	19.54	0.01	1.918	6.81	1.35	5.5	94.4	0.1	-1.34	0.70	0.69	2.33	3.8	0.003	0.69	0.0	0.04	19.98	0.00	1.882	8.78	3.60	5.6	94.4	0.0	-0.88	0.57	0.72	0.75	1.85	6770	734	4	41	2	0	0	logfile
✔	7YG1	33804	2024-11-14	2022-07-09	3.77	4.01	3.78	3.9	0.005	1.15	1.0	0.06	14.00	0.01	2.230	42.79	1.33	14.0	86.0	0.0	-3.77	0.65	0.65	0.57	3.9	0.004	0.92	0.0	0.05	16.97	0.00	2.506	19.92	4.42	8.3	91.6	0.1	-1.68	1.46	0.68	0.68	0.56	6208	770	2	0	0	0	0	logfile
✔	8DMY	27549	2024-11-16	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.63	0.0	0.05	17.52	0.00	2.452	3.08	2.61	4.3	95.7	0.0	-0.10	1.02	0.64	0.88	2.07	11796	1494	8	0	8	0	0	logfile

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