Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DMo	27545	2024-11-15	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.76	0.0	0.04	15.98	0.00	2.491	10.46	0.92	2.4	97.6	0.0	1.96	0.62	0.86	0.87	0.78	8912	1150	2	0	0	0	0	logfile
✔	8DM8	27530	2024-11-14	2022-07-08	2.68	3.21	2.72	3.1	0.006	0.89	0.0	0.06	13.50	0.01	2.306	3.39	0.72	1.8	98.2	0.0	-0.72	0.78	0.85	3.05	3.1	0.004	0.63	0.0	0.04	15.59	0.00	2.519	6.24	1.88	2.4	97.6	0.0	1.26	1.21	0.79	0.87	2.93	6479	794	4	0	3	0	0	logfile
✔	8DMH	27538	2024-11-17	2022-07-08	3.19	3.54	3.17	3.2	0.003	0.60	0.0	0.04	16.83	0.00	2.149	9.05	0.00	4.3	95.7	0.0	-1.30	0.82	0.83	3.37	3.2	0.006	0.73	0.0	0.05	15.29	0.00	2.377	8.19	1.87	4.5	95.5	0.0	-0.71	4.01	0.83	0.85	2.75	14259	1725	36	0	45	0	0	logfile
✔	8DMG	27536	2024-11-18	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.006	0.96	0.0	0.04	13.80	0.01	2.149	84.69	0.00	7.0	92.9	0.0	-0.13	2.25	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile
✔	8DMX	27548	2024-11-16	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.003	0.57	0.0	0.04	15.96	0.00	1.952	3.48	1.75	2.6	97.4	0.0	-0.49	0.51	0.70	0.91	2.33	11748	1488	8	0	8	0	0	logfile
✔	8DLR	27512	2024-11-14	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.81	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.003	0.57	0.0	0.04	14.37	0.00	2.528	5.05	1.15	2.8	97.2	0.0	-0.35	0.38	0.71	0.85	5.12	4027	505	4	0	6	0	0	logfile
✔	8DLK	27504	2024-11-14	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.59	0.0	0.04	14.87	0.00	2.431	6.41	0.86	2.1	97.9	0.0	1.82	1.16	0.82	0.86	2.47	6554	797	4	0	7	0	0	logfile
✔	8ADE	15361	2024-11-14	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.007	0.79	0.0	0.05	15.30	0.01	2.602	14.72	2.20	2.1	97.9	0.0	-2.44	0.74	0.77	0.84	4.59	5026	644	7	0	0	0	0	logfile
✔	8DM4	27526	2024-11-14	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.66	0.0	0.05	15.29	0.00	2.397	8.25	2.06	3.1	96.9	0.0	0.10	1.17	0.68	0.83	5.38	4018	497	5	0	6	0	0	logfile
✔	8DLQ	27510	2024-11-14	2022-07-08	2.77	3.49	2.82	3.2	0.006	0.91	0.0	0.06	13.16	0.01	2.296	3.05	0.43	1.8	98.2	0.0	0.35	0.84	0.87	3.52	3.2	0.003	0.58	0.0	0.04	15.20	0.00	2.550	6.02	0.71	1.8	98.2	0.0	1.64	0.64	0.83	0.87	2.55	6552	797	4	0	7	0	0	logfile
✔	7YFG	33789	2024-11-20	2022-07-08	3.6	3.14	3.54	3.5	0.011	1.14	1.0	0.05	17.45	0.01	2.035	10.50	0.22	5.9	93.9	0.2	-0.95	0.77	0.79	2.58	3.5	0.003	0.60	0.0	0.04	16.61	0.00	2.453	6.17	2.49	6.4	93.5	0.1	-0.45	0.36	0.76	0.80	2.17	21215	2620	25	0	48	0	0	logfile
✔	8DLY	27520	2024-11-14	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.41	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.004	0.70	0.0	0.04	15.80	0.00	2.528	9.91	4.12	3.2	96.8	0.0	-1.02	1.22	0.63	0.82	3.53	2483	314	3	0	1	0	0	logfile
✔	8DLV	27517	2024-11-14	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.53	0.0	0.04	14.94	0.00	2.482	5.70	1.00	2.5	97.5	0.0	1.79	0.61	0.83	0.87	2.20	6553	797	4	0	7	0	0	logfile
✔	8DMi	27539	2024-11-15	2022-07-08	3.26	4.04	3.27	3.5	0.004	0.81	0.0	0.06	14.47	0.01	2.117	8.99	0.00	5.9	94.1	0.0	-1.20	0.82	0.78	3.33	3.5	0.004	0.80	0.0	0.04	14.83	0.00	2.503	6.76	1.62	4.6	95.4	0.0	0.15	0.77	0.87	0.86	2.88	8259	951	30	0	42	0	0	logfile
✔	8DM0	27522	2024-11-14	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.65	0.0	0.05	14.98	0.00	2.544	8.68	1.87	4.2	95.8	0.0	-0.92	0.46	0.60	0.82	2.53	2480	314	3	0	1	0	0	logfile
✔	8DLN	27507	2024-11-14	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.61	0.0	0.04	14.88	0.00	2.473	7.42	1.00	2.5	97.5	0.0	1.66	2.31	0.84	0.87	2.85	6553	797	4	0	7	0	0	logfile
✔	8DMK	27542	2024-11-14	2022-07-08	3.7	4.20	3.87	4.0	0.003	0.57	0.0	0.04	14.55	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.67	0.0	0.05	15.83	0.00	2.257	13.57	1.62	7.8	92.2	0.0	-1.71	1.07	0.79	0.74	0.98	7348	917	6	0	6	0	0	logfile
✔	7YFC	33785	2024-11-16	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	7YFL	33792	2024-11-19	2022-07-08	3.9	4.15	3.84	4.0	0.005	0.64	0.0	0.04	16.70	0.00	2.260	9.01	0.34	7.9	91.8	0.3	-0.49	0.72	0.77	1.05	4.0	0.002	0.60	0.0	0.04	16.34	0.00	2.578	6.75	3.06	6.9	92.9	0.1	-0.27	1.09	0.71	0.75	1.08	19968	2778	14	0	18	0	0	logfile
✔	8ADN	15365	2024-11-18	2022-07-08	2.77	3.03	2.95	3.0	0.003	0.54	0.0	0.04	15.31	0.00	1.810	4.93	0.85	2.3	97.7	0.0	0.68	0.72	0.82	3.23	3.1	0.004	0.70	0.0	0.04	16.75	0.00	1.356	8.05	1.85	2.3	97.7	0.0	1.04	0.39	0.73	0.83	2.54	48318	6160	30	0	0	0	0	logfile

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