Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DM4	27526	2024-11-14	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.66	0.0	0.05	15.29	0.00	2.397	8.25	2.06	3.1	96.9	0.0	0.10	1.17	0.68	0.83	5.38	4018	497	5	0	6	0	0	logfile
✔	8DLV	27517	2024-11-14	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.53	0.0	0.04	14.94	0.00	2.482	5.70	1.00	2.5	97.5	0.0	1.79	0.61	0.83	0.87	2.20	6553	797	4	0	7	0	0	logfile
✔	8DM0	27522	2024-11-14	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.65	0.0	0.05	14.98	0.00	2.544	8.68	1.87	4.2	95.8	0.0	-0.92	0.46	0.60	0.82	2.53	2480	314	3	0	1	0	0	logfile
✔	8DLN	27507	2024-11-14	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.61	0.0	0.04	14.88	0.00	2.473	7.42	1.00	2.5	97.5	0.0	1.66	2.31	0.84	0.87	2.85	6553	797	4	0	7	0	0	logfile
✔	7YFC	33785	2024-11-16	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	8DMG	27536	2024-11-18	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.006	0.96	0.0	0.04	13.80	0.01	2.149	84.69	0.00	7.0	92.9	0.0	-0.13	2.25	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile
✔	8DL8	27499	2024-11-14	2022-07-07	3.0	4.08	3.15	3.6	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.003	0.82	0.0	0.04	16.64	0.00	2.026	8.75	3.19	3.1	96.8	0.1	2.40	0.56	0.72	0.83	2.19	6208	877	5	0	2	1	0	logfile
✔	8DL6	27497	2024-11-14	2022-07-07	3.0	4.19	2.98	3.5	0.008	1.09	0.0	0.06	14.53	0.00	2.169	7.37	3.22	6.9	92.1	0.9	-0.55	0.75	0.81	1.88	3.5	0.003	0.74	0.0	0.04	14.80	0.00	2.430	5.84	1.61	5.2	94.4	0.3	2.02	0.47	0.75	0.82	1.49	6171	874	5	0	1	1	0	logfile
✔	8DLF	27500	2024-11-16	2022-07-07	3.23	3.07	3.22	3.0	0.009	1.29	0.0	0.16	25.90	0.01	2.103	35.48	8.48	8.3	90.2	1.4	-1.74	0.60	0.48	0.90	3.0	0.004	0.74	0.0	0.04	26.17	0.01	2.479	19.28	5.01	9.8	89.4	0.8	-1.86	1.72	0.66	0.56	0.78	7167	631	10	112	0	4	0	logfile
✔	8ACT	15353	2024-11-19	2022-07-06	3.6	4.18	3.75	3.6	0.003	0.64	0.0	0.04	14.83	0.00	1.812	16.02	0.00	2.9	97.1	0.0	0.58	0.83	0.70	0.76	3.6	0.003	0.79	0.0	0.04	16.65	0.00	1.956	15.49	1.48	3.8	96.2	0.0	-0.11	2.03	0.83	0.72	0.89	18843	2322	8	0	6	0	0	logfile
✔	8DKW	27492	2024-11-14	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.62	0.0	0.04	15.33	0.00	2.619	5.40	2.28	5.1	94.9	0.0	-0.19	0.36	0.55	0.83	2.89	4370	553	3	0	0	0	0	logfile
✔	7YET	33777	2024-11-16	2022-07-06	3.3	3.55	—	3.5	0.004	0.61	0.0	0.04	14.41	0.01	2.204	7.29	0.23	5.9	93.7	0.4	1.31	0.70	0.81	2.52	3.5	0.004	0.89	1.0	0.04	15.89	0.00	2.282	7.25	1.52	6.3	93.2	0.5	1.27	1.50	0.71	0.83	2.17	11862	1493	6	0	1	0	0	logfile
✔	8DKX	27493	2024-11-14	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.65	0.0	0.04	15.60	0.00	2.556	5.86	3.11	5.7	94.3	0.0	-0.57	0.91	0.60	0.85	3.72	4370	553	3	0	0	0	0	logfile
✔	8DL0	27494	2024-11-19	2022-07-06	4.1	4.31	4.17	4.1	0.003	0.67	0.0	0.05	13.22	0.00	2.168	13.34	0.00	4.1	95.9	0.0	0.25	0.73	0.75	—	4.1	0.003	0.64	0.0	0.04	13.58	0.00	2.331	10.95	0.00	4.0	96.0	0.0	0.14	1.19	0.73	0.76	—	10377	1268	4	0	0	0	0	logfile
✔	8DKU	27491	2024-11-17	2022-07-06	3.2	3.52	3.38	3.5	0.004	0.63	0.0	0.05	14.08	0.00	2.201	7.49	0.00	6.0	94.0	0.0	-0.86	0.67	0.79	2.19	3.5	0.003	0.60	0.0	0.04	16.23	0.00	2.517	7.07	1.98	5.3	94.7	0.0	-0.66	1.18	0.66	0.80	1.96	10644	1300	5	0	3	0	0	logfile
✔	7YER	33775	2024-11-17	2022-07-06	3.0	3.14	—	3.2	0.003	0.55	0.0	0.04	13.65	0.00	2.248	4.24	0.13	6.3	93.2	0.4	0.97	0.69	0.82	2.38	3.1	0.003	0.58	0.0	0.04	16.32	0.00	2.479	3.61	1.57	6.0	93.6	0.4	1.03	0.35	0.67	0.83	2.02	14313	1810	6	0	1	0	0	logfile
✔	8ACC	15346	2024-11-13	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.005	0.70	0.0	0.05	17.26	0.00	2.479	6.55	3.95	12.7	86.5	0.9	-1.75	0.60	0.20	0.84	3.72	1779	231	2	5	0	0	0	logfile
✔	8DKE	27488	2024-11-14	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.56	0.0	0.04	15.64	0.00	2.592	4.48	2.07	6.6	93.4	0.0	0.27	0.28	0.56	0.85	3.37	4369	553	3	0	0	0	0	logfile
✔	8ACB	15345	2024-11-13	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.75	0.00	2.583	4.88	1.14	8.7	91.3	0.0	-0.52	1.22	0.20	0.84	3.54	1815	220	2	5	0	0	0	logfile
✔	8DKM	27490	2024-11-14	2022-07-05	3.39	3.59	3.11	3.6	0.003	0.67	0.0	0.04	13.47	0.00	2.241	7.23	0.83	6.4	93.6	0.0	-0.94	0.62	0.84	2.67	3.6	0.003	0.58	0.0	0.04	15.57	0.00	2.604	5.51	3.32	6.2	93.8	0.0	-0.08	0.39	0.61	0.86	2.38	4383	553	4	0	1	0	0	logfile

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