Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y15	33557	2024-11-15	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	7Y13	33555	2024-11-13	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.62	0.0	0.04	15.59	0.01	2.624	7.35	0.86	6.5	93.5	0.0	2.74	0.29	0.55	0.80	2.59	2199	264	2	0	7	2	0	logfile
✔	7Y0W	33552	2024-11-14	2022-06-06	3.42	3.69	3.35	3.6	0.006	0.95	0.0	0.06	14.24	0.01	2.295	4.22	0.18	6.9	93.1	0.0	-2.40	0.68	0.83	2.65	3.6	0.003	0.59	0.0	0.05	15.47	0.00	2.480	8.25	3.48	6.1	93.9	0.0	-1.54	0.40	0.67	0.84	2.57	5086	651	6	0	3	0	0	logfile
✔	7Y14	33556	2024-11-13	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.58	1.0	0.04	15.62	0.00	2.608	7.60	0.87	3.8	96.2	0.0	3.30	0.99	0.50	0.78	2.34	2145	265	2	0	4	0	0	logfile
✔	8D66	27218	2024-11-17	2022-06-06	3.14	3.25	3.04	3.2	0.009	1.02	0.0	0.06	18.54	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.002	0.54	0.0	0.05	15.59	0.00	2.556	5.94	2.62	4.5	95.5	0.0	0.18	0.37	0.65	0.82	3.29	12800	1540	10	0	5	0	0	logfile
✔	8D63	27215	2024-11-17	2022-06-06	3.14	3.26	3.09	3.2	0.009	0.99	0.0	0.06	16.37	0.01	2.290	9.81	0.36	5.0	94.7	0.3	-1.01	0.65	0.81	4.38	3.2	0.004	0.55	0.0	0.05	15.48	0.00	2.408	4.34	0.58	3.5	96.5	0.0	0.78	0.33	0.66	0.84	3.96	12785	1535	10	0	5	0	0	logfile
✔	8D65	27217	2024-11-17	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.84	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.53	0.0	0.05	15.10	0.00	2.566	2.62	1.31	3.2	96.8	0.0	0.46	0.48	0.72	0.86	3.31	12780	1535	10	0	5	0	0	logfile
✔	8A2Z	15109	2024-11-18	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.62	0.0	0.04	15.75	0.00	2.189	3.65	0.90	1.7	98.3	0.0	1.70	1.46	0.74	0.89	5.84	15060	1830	15	0	10	570	0	logfile
✔	8A2R	15104	2024-11-18	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.003	0.64	0.0	0.04	16.74	0.00	1.833	2.36	0.90	1.7	98.3	0.0	1.72	0.88	0.73	0.90	5.66	14990	1830	15	0	15	480	0	logfile
✔	8D64	27216	2024-11-17	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.004	0.60	0.0	0.05	15.25	0.00	2.517	4.29	1.75	6.1	93.9	0.0	-0.31	1.18	0.73	0.86	3.21	12545	1540	10	0	0	0	0	logfile
✔	7Y0J	33547	2024-11-20	2022-06-05	3.62	3.92	3.55	4.0	0.003	0.69	0.0	0.05	14.37	0.01	2.181	7.49	0.13	5.2	94.8	0.0	-0.97	0.70	0.73	1.59	4.0	0.004	0.70	0.0	0.05	15.79	0.00	2.427	12.33	2.12	6.2	93.8	0.0	-0.70	0.50	0.70	0.75	1.47	20717	2616	23	0	12	0	0	logfile
✔	7Y0o	33551	2024-11-14	2022-06-05	4.4	3.19	4.10	3.0	0.004	0.93	0.0	0.06	15.07	0.01	2.254	9.72	0.00	9.8	90.1	0.2	-3.24	0.65	0.55	—	3.1	0.003	0.77	0.0	0.05	15.21	0.00	2.424	14.27	0.00	10.9	89.1	0.0	-3.24	0.39	0.65	0.56	—	4185	541	6	0	0	18	0	logfile
✔	7XZX	33533	2024-11-19	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.003	0.63	0.0	0.04	25.46	0.00	2.061	9.22	0.00	1.4	98.6	0.0	1.13	1.72	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7XZY	33534	2024-11-17	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	27.84	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.005	0.72	0.0	0.03	28.35	0.00	2.047	8.44	1.73	2.7	97.3	0.0	1.97	2.21	0.92	0.88	1.11	12821	762	10	330	0	0	0	logfile
✔	7Y09	33538	2024-11-20	2022-06-03	3.71	4.08	3.85	4.0	0.003	0.67	0.0	0.05	14.30	0.01	2.213	8.81	0.13	3.9	96.1	0.0	-0.40	0.77	0.76	1.47	4.0	0.003	0.67	0.0	0.05	15.96	0.00	2.449	12.40	2.54	4.6	95.4	0.0	-0.16	2.24	0.79	0.80	1.14	20817	2636	23	0	12	0	0	logfile
✔	7Y04	33537	2024-11-16	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.004	0.63	0.0	0.04	16.68	0.00	0.912	4.74	1.79	5.0	95.0	0.0	-1.18	1.14	0.69	0.78	2.40	12050	1475	7	0	4	0	0	logfile
✔	7Y00	33536	2024-11-16	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.91	1.0	0.03	28.92	0.00	2.081	12.39	1.89	2.3	97.6	0.1	2.07	1.72	0.93	0.88	0.93	12411	762	10	310	0	0	0	logfile
✔	7XZZ	33535	2024-11-19	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.003	0.64	0.0	0.04	25.21	0.00	2.003	9.68	0.00	1.7	98.3	0.0	1.46	1.34	0.87	0.81	—	18623	1554	14	310	0	0	0	logfile
✔	7XZ6	33526	2024-11-18	2022-06-02	2.8	2.66	2.73	2.8	0.003	0.56	0.0	0.04	12.81	0.00	2.078	5.47	0.00	1.3	98.7	0.0	1.92	0.60	0.75	2.90	2.7	0.004	0.90	1.0	0.04	16.12	0.00	2.361	4.99	1.80	2.7	97.3	0.0	1.07	1.62	0.61	0.80	3.30	16458	1052	6	0	1	1	8192	logfile
✔	7XZ5	33525	2024-11-18	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.34	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.003	0.54	0.0	0.04	15.66	0.00	2.359	3.33	1.01	2.1	97.9	0.0	1.31	0.62	0.62	0.80	2.94	16456	1052	6	0	1	0	8189	logfile

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