Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D45	27175	2024-11-20	2022-06-01	2.62	2.70	2.64	2.9	0.004	0.79	0.0	0.04	17.51	0.01	2.203	4.67	0.92	5.2	94.8	0.0	-1.43	0.62	0.71	3.11	2.9	0.004	0.65	0.0	0.04	17.52	0.01	2.187	6.10	1.74	5.8	94.2	0.0	-0.33	0.41	0.62	0.73	3.04	20932	1358	4	0	0	0	10370	logfile
✔	8D3Y	27168	2024-11-15	2022-06-01	3.9	3.70	3.84	3.7	0.007	0.81	0.0	0.04	17.34	0.01	2.198	10.16	0.19	6.7	93.3	0.0	-0.14	0.60	0.81	1.42	3.7	0.002	0.60	0.0	0.04	17.75	0.00	2.545	7.01	4.37	5.2	94.7	0.1	0.28	0.36	0.60	0.81	1.15	9898	1298	3	0	0	0	0	logfile
✔	8D43	27173	2024-11-15	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.92	0.0	0.05	18.28	0.01	2.214	17.25	2.38	8.5	91.5	0.0	-1.89	2.69	0.40	0.34	0.78	7763	962	5	0	6	1	0	logfile
✔	7XYF	33520	2024-11-18	2022-06-01	4.3	4.47	3.32	4.3	0.008	0.93	0.0	0.05	27.11	0.01	2.217	13.45	2.14	4.9	95.1	0.0	-4.98	0.87	0.81	—	4.3	0.004	0.70	0.0	0.04	25.80	0.00	2.017	16.51	0.08	4.7	95.3	0.0	-0.14	0.80	0.88	0.81	—	17321	1418	11	292	0	0	0	logfile
✔	7XYM	33522	2024-11-17	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.004	1.03	0.0	0.05	16.52	0.01	2.132	19.03	1.29	23.9	74.2	1.9	-4.60	1.43	0.69	0.78	2.13	11436	1464	3	0	0	0	0	logfile
✔	8D3R	27163	2024-11-18	2022-06-01	3.04	2.33	3.07	2.9	0.004	0.61	0.0	0.04	18.93	0.00	1.941	7.12	0.20	4.8	95.2	0.0	-0.07	0.67	0.74	1.35	2.9	0.003	0.67	0.0	0.04	19.68	0.00	2.366	7.73	3.39	3.0	97.0	0.1	0.24	1.33	0.67	0.75	1.48	15113	1768	6	45	2	0	0	logfile
✔	8D4B	27180	2024-11-16	2022-06-01	2.92	3.58	2.96	3.3	0.005	0.70	0.0	0.04	16.40	0.00	1.942	5.37	0.00	2.2	97.8	0.0	-1.63	0.86	0.83	4.41	3.3	0.002	0.52	0.0	0.04	17.33	0.00	2.186	7.96	0.76	2.1	97.9	0.0	0.74	0.52	0.84	0.87	3.38	11010	1166	3	69	0	0	0	logfile
✔	8D3W	27166	2024-11-16	2022-06-01	3.5	3.33	3.42	3.5	0.014	0.84	0.0	0.04	17.17	0.01	2.186	10.16	0.09	5.9	94.1	0.0	-0.26	0.62	0.82	1.71	3.5	0.002	0.58	0.0	0.04	17.31	0.00	2.456	6.92	2.01	4.5	95.5	0.0	0.40	0.38	0.60	0.79	1.52	10046	1280	4	0	1	0	0	logfile
✔	8D3X	27167	2024-11-18	2022-06-01	4.1	3.74	4.08	3.8	0.003	0.69	2.0	0.06	14.47	0.00	1.492	14.67	0.27	4.4	95.3	0.3	-0.48	0.57	0.78	—	3.8	0.003	0.59	0.0	0.04	14.61	0.00	2.387	8.90	0.00	4.2	95.8	0.0	-0.12	0.91	0.57	0.79	—	10219	1305	4	0	1	0	0	logfile
✔	8D3V	27165	2024-11-18	2022-06-01	3.4	2.99	3.31	3.3	0.003	0.49	0.0	0.04	14.47	0.00	2.143	6.74	0.00	4.6	95.4	0.0	-1.13	0.58	0.79	2.56	3.3	0.004	0.99	1.0	0.05	15.56	0.00	1.653	6.64	1.19	4.5	95.5	0.0	0.00	0.29	0.58	0.78	2.21	10011	1279	3	0	0	0	0	logfile
✔	8D3L	27159	2024-11-18	2022-06-01	3.49	3.77	3.49	3.8	0.003	0.62	1.0	0.04	17.74	0.00	1.752	9.01	0.23	6.0	93.8	0.3	-0.39	0.74	0.76	1.52	3.8	0.006	0.96	2.0	0.05	19.54	0.00	2.071	8.11	2.40	7.7	92.1	0.2	-0.15	1.04	0.70	0.78	1.65	17485	2001	15	65	4	4	0	logfile
✔	8D3U	27164	2024-11-18	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.003	0.66	0.0	0.04	17.75	0.00	2.450	9.05	2.62	5.0	94.9	0.1	0.72	0.93	0.65	0.82	1.47	10121	1287	4	0	2	0	0	logfile
✔	8D4A	27179	2024-11-16	2022-06-01	2.74	3.31	2.79	3.1	0.006	0.71	0.0	0.04	17.65	0.00	2.098	3.27	0.09	2.2	97.8	0.0	-0.49	0.87	0.87	4.89	3.1	0.003	0.54	0.0	0.04	18.43	0.00	1.988	4.29	0.82	2.1	97.9	0.0	1.58	1.96	0.83	0.88	4.00	11798	1207	6	91	3	1	0	logfile
✔	8D48	27177	2024-11-14	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.004	0.73	0.0	0.05	15.91	0.01	2.438	6.61	3.05	5.5	94.5	0.0	-0.90	0.50	0.73	0.80	2.09	5545	714	4	0	2	0	0	logfile
✔	7XYC	33519	2024-11-17	2022-06-01	3.8	3.92	—	3.9	0.002	0.63	0.0	0.05	13.85	0.00	2.237	10.77	0.00	7.1	92.7	0.2	-1.79	0.82	0.85	1.61	3.9	0.003	0.62	0.0	0.05	15.95	0.00	2.463	7.32	4.53	8.6	91.4	0.1	-1.91	0.41	0.77	0.85	1.96	12621	1686	3	0	0	0	0	logfile
✔	8A1R	15084	2024-11-15	2022-06-01	3.6	5.63	3.62	3.4	0.011	0.86	0.0	0.06	16.56	0.00	2.097	11.72	0.00	5.2	94.8	0.0	-0.06	0.91	0.75	-0.28	3.5	0.004	0.73	1.0	0.05	16.24	0.00	2.545	18.40	1.63	6.6	93.4	0.0	-0.38	0.60	0.95	0.86	-0.05	9286	1186	4	0	4	0	0	logfile
✔	8D49	27178	2024-11-15	2022-06-01	3.2	3.92	3.27	3.7	0.009	0.84	3.0	0.05	16.10	0.01	2.098	6.45	1.14	4.0	95.9	0.1	-0.72	0.86	0.85	3.17	3.7	0.003	0.51	0.0	0.04	16.58	0.00	2.516	4.32	0.52	2.9	97.1	0.0	1.12	1.93	0.83	0.81	2.55	9281	1072	2	26	0	0	0	logfile
✔	7XY9	33514	2024-11-16	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.66	0.0	0.05	17.35	0.00	1.884	4.02	2.23	4.4	95.6	0.0	-0.18	0.85	0.75	0.87	5.40	10962	1376	12	0	12	574	0	logfile
✔	7XY7	33513	2024-11-14	2022-05-31	3.26	2.43	3.29	2.2	0.003	0.58	0.0	0.04	15.86	0.00	2.141	5.62	0.40	2.0	98.0	0.0	1.03	0.77	0.78	2.13	2.2	0.004	0.55	0.0	0.04	16.36	0.00	2.519	3.48	3.17	2.5	97.5	0.0	1.37	1.01	0.77	0.79	1.78	7047	895	5	0	1	0	0	logfile
✔	7XY1	33507	2024-11-16	2022-05-31	3.3	3.36	—	3.3	0.005	0.76	6.0	0.06	13.22	0.01	2.035	16.43	0.97	8.4	91.0	0.6	-2.22	0.76	0.83	3.69	3.3	0.003	0.63	0.0	0.05	15.08	0.00	2.474	8.33	1.62	9.3	90.5	0.2	-2.43	0.33	0.78	0.85	2.94	11550	1536	3	0	0	0	0	logfile

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