Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D65	27217	2024-11-17	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.84	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.53	0.0	0.05	15.10	0.00	2.566	2.62	1.31	3.2	96.8	0.0	0.46	0.48	0.72	0.86	3.31	12780	1535	10	0	5	0	0	logfile
✔	7Y0o	33551	2024-11-14	2022-06-05	4.4	3.19	4.10	3.0	0.004	0.93	0.0	0.06	15.07	0.01	2.254	9.72	0.00	9.8	90.1	0.2	-3.24	0.65	0.55	—	3.1	0.003	0.77	0.0	0.05	15.21	0.00	2.424	14.27	0.00	10.9	89.1	0.0	-3.24	0.39	0.65	0.56	—	4185	541	6	0	0	18	0	logfile
✔	7Y0J	33547	2024-11-20	2022-06-05	3.62	3.92	3.55	4.0	0.003	0.69	0.0	0.05	14.37	0.01	2.181	7.49	0.13	5.2	94.8	0.0	-0.97	0.70	0.73	1.59	4.0	0.004	0.70	0.0	0.05	15.79	0.00	2.427	12.33	2.12	6.2	93.8	0.0	-0.70	0.50	0.70	0.75	1.47	20717	2616	23	0	12	0	0	logfile
✔	7XZX	33533	2024-11-19	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.003	0.63	0.0	0.04	25.46	0.00	2.061	9.22	0.00	1.4	98.6	0.0	1.13	1.72	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7XZZ	33535	2024-11-19	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.003	0.64	0.0	0.04	25.21	0.00	2.003	9.68	0.00	1.7	98.3	0.0	1.46	1.34	0.87	0.81	—	18623	1554	14	310	0	0	0	logfile
✔	7Y09	33538	2024-11-20	2022-06-03	3.71	4.08	3.85	4.0	0.003	0.67	0.0	0.05	14.30	0.01	2.213	8.81	0.13	3.9	96.1	0.0	-0.40	0.77	0.76	1.47	4.0	0.003	0.67	0.0	0.05	15.96	0.00	2.449	12.40	2.54	4.6	95.4	0.0	-0.16	2.24	0.79	0.80	1.14	20817	2636	23	0	12	0	0	logfile
✔	7Y00	33536	2024-11-16	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.91	1.0	0.03	28.92	0.00	2.081	12.39	1.89	2.3	97.6	0.1	2.07	1.72	0.93	0.88	0.93	12411	762	10	310	0	0	0	logfile
✔	7XZY	33534	2024-11-17	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	27.84	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.005	0.72	0.0	0.03	28.35	0.00	2.047	8.44	1.73	2.7	97.3	0.0	1.97	2.21	0.92	0.88	1.11	12821	762	10	330	0	0	0	logfile
✔	7Y04	33537	2024-11-16	2022-06-03	3.5	4.03	—	4.0	0.004	0.76	0.0	0.04	15.69	0.00	2.217	6.36	0.75	4.7	95.3	0.0	-2.60	0.57	0.66	2.70	4.0	0.004	0.63	0.0	0.04	16.68	0.00	0.912	4.74	1.79	5.0	95.0	0.0	-1.18	1.14	0.69	0.78	2.40	12050	1475	7	0	4	0	0	logfile
✔	7XZ5	33525	2024-11-18	2022-06-02	3.1	2.85	3.00	3.0	0.020	1.55	81.0	0.21	14.34	0.00	2.103	2.18	0.00	1.7	98.3	0.0	1.35	0.60	0.75	2.79	3.0	0.003	0.54	0.0	0.04	15.66	0.00	2.359	3.33	1.01	2.1	97.9	0.0	1.31	0.62	0.62	0.80	2.94	16456	1052	6	0	1	0	8189	logfile
✔	7XZ6	33526	2024-11-18	2022-06-02	2.8	2.66	2.73	2.8	0.003	0.56	0.0	0.04	12.81	0.00	2.078	5.47	0.00	1.3	98.7	0.0	1.92	0.60	0.75	2.90	2.7	0.004	0.90	1.0	0.04	16.12	0.00	2.361	4.99	1.80	2.7	97.3	0.0	1.07	1.62	0.61	0.80	3.30	16458	1052	6	0	1	1	8192	logfile
✔	8D3V	27165	2024-11-18	2022-06-01	3.4	2.99	3.31	3.3	0.003	0.49	0.0	0.04	14.47	0.00	2.143	6.74	0.00	4.6	95.4	0.0	-1.13	0.58	0.79	2.56	3.3	0.004	0.99	1.0	0.05	15.56	0.00	1.653	6.64	1.19	4.5	95.5	0.0	0.00	0.29	0.58	0.78	2.21	10011	1279	3	0	0	0	0	logfile
✔	8D45	27175	2024-11-20	2022-06-01	2.62	2.70	2.64	2.9	0.004	0.79	0.0	0.04	17.51	0.01	2.203	4.67	0.92	5.2	94.8	0.0	-1.43	0.62	0.71	3.11	2.9	0.004	0.65	0.0	0.04	17.52	0.01	2.187	6.10	1.74	5.8	94.2	0.0	-0.33	0.41	0.62	0.73	3.04	20932	1358	4	0	0	0	10370	logfile
✔	8D49	27178	2024-11-15	2022-06-01	3.2	3.92	3.27	3.7	0.009	0.84	3.0	0.05	16.10	0.01	2.098	6.45	1.14	4.0	95.9	0.1	-0.72	0.86	0.85	3.17	3.7	0.003	0.51	0.0	0.04	16.58	0.00	2.516	4.32	0.52	2.9	97.1	0.0	1.12	1.93	0.83	0.81	2.55	9281	1072	2	26	0	0	0	logfile
✔	8D4A	27179	2024-11-16	2022-06-01	2.74	3.31	2.79	3.1	0.006	0.71	0.0	0.04	17.65	0.00	2.098	3.27	0.09	2.2	97.8	0.0	-0.49	0.87	0.87	4.89	3.1	0.003	0.54	0.0	0.04	18.43	0.00	1.988	4.29	0.82	2.1	97.9	0.0	1.58	1.96	0.83	0.88	4.00	11798	1207	6	91	3	1	0	logfile
✔	7XY9	33514	2024-11-16	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.66	0.0	0.05	17.35	0.00	1.884	4.02	2.23	4.4	95.6	0.0	-0.18	0.85	0.75	0.87	5.40	10962	1376	12	0	12	574	0	logfile
✔	8D3U	27164	2024-11-18	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.003	0.66	0.0	0.04	17.75	0.00	2.450	9.05	2.62	5.0	94.9	0.1	0.72	0.93	0.65	0.82	1.47	10121	1287	4	0	2	0	0	logfile
✔	8D48	27177	2024-11-14	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.004	0.73	0.0	0.05	15.91	0.01	2.438	6.61	3.05	5.5	94.5	0.0	-0.90	0.50	0.73	0.80	2.09	5545	714	4	0	2	0	0	logfile
✔	8D3Y	27168	2024-11-15	2022-06-01	3.9	3.70	3.84	3.7	0.007	0.81	0.0	0.04	17.34	0.01	2.198	10.16	0.19	6.7	93.3	0.0	-0.14	0.60	0.81	1.42	3.7	0.002	0.60	0.0	0.04	17.75	0.00	2.545	7.01	4.37	5.2	94.7	0.1	0.28	0.36	0.60	0.81	1.15	9898	1298	3	0	0	0	0	logfile
✔	8D43	27173	2024-11-15	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.92	0.0	0.05	18.28	0.01	2.214	17.25	2.38	8.5	91.5	0.0	-1.89	2.69	0.40	0.34	0.78	7763	962	5	0	6	1	0	logfile

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