Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D33	27154	2024-11-18	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	8D37	27155	2024-11-18	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.005	0.89	1.0	0.04	18.30	0.01	2.075	11.37	4.13	3.9	96.1	0.0	0.54	0.73	0.67	0.74	1.51	15314	1784	6	48	2	0	0	logfile
✔	8D2T	27149	2024-11-15	2022-05-30	3.4	3.60	3.42	3.5	0.011	1.10	0.0	0.05	27.92	0.01	2.257	6.54	0.51	6.9	93.1	0.0	-0.99	0.70	0.79	4.07	3.5	0.003	0.71	0.0	0.04	13.42	0.00	2.200	9.08	2.23	5.4	94.6	0.0	0.05	1.02	0.70	0.78	3.08	6609	864	6	0	10	4	0	logfile
✔	8D2N	27143	2024-11-16	2022-05-30	2.88	2.50	2.55	2.8	0.004	0.94	0.0	0.05	20.41	0.01	2.129	5.17	0.00	4.8	95.1	0.1	-1.94	0.60	0.72	2.56	2.8	0.004	0.65	0.0	0.04	20.84	0.00	1.950	10.10	1.64	4.6	95.4	0.0	-0.52	0.36	0.63	0.76	2.40	11414	1105	5	128	1	0	0	logfile
✔	8D2U	27150	2024-11-15	2022-05-30	3.3	3.47	3.31	3.4	0.012	1.45	0.0	0.05	27.08	0.01	2.344	6.69	0.99	6.5	93.5	0.0	-2.64	0.66	0.79	3.97	3.4	0.003	0.62	0.0	0.04	13.63	0.00	2.458	8.52	2.63	6.0	94.0	0.0	-0.01	0.54	0.69	0.83	3.72	6862	864	7	0	18	5	0	logfile
✔	8D2K	27141	2024-11-17	2022-05-30	2.43	2.17	2.40	2.4	0.006	0.91	0.0	0.05	20.18	0.01	2.000	3.93	0.00	1.5	98.5	0.0	-0.18	0.66	0.84	4.54	2.4	0.003	0.58	0.0	0.04	20.97	0.00	1.934	8.23	0.66	1.5	98.5	0.0	1.32	0.29	0.66	0.85	4.31	12295	1105	13	154	11	300	0	logfile
✔	8A11	15065	2024-11-18	2022-05-30	3.52	3.71	3.54	3.3	0.006	0.60	0.0	0.04	11.18	0.01	2.214	6.78	0.00	2.9	97.0	0.1	-2.20	0.88	0.75	1.35	3.3	0.002	0.54	0.0	0.04	13.23	0.00	2.515	6.12	1.24	2.9	97.1	0.0	0.98	0.45	0.89	0.79	1.80	14630	1875	5	6	0	0	0	logfile
✔	8D2P	27145	2024-11-16	2022-05-30	2.78	2.32	2.66	2.7	0.005	0.81	0.0	0.05	18.65	0.01	2.018	3.73	0.00	1.9	98.1	0.0	-1.23	0.63	0.82	4.10	2.7	0.005	0.63	0.0	0.04	19.82	0.01	1.830	8.39	1.53	2.2	97.8	0.0	0.46	0.34	0.64	0.84	3.73	11436	1105	8	125	11	36	0	logfile
✔	8D2o	27144	2024-11-15	2022-05-30	2.66	2.44	2.64	2.7	0.005	0.85	0.0	0.05	21.02	0.01	2.174	4.02	0.00	1.8	98.2	0.0	-1.19	0.66	0.83	4.04	2.7	0.003	0.56	0.0	0.04	21.25	0.00	2.073	8.17	1.65	1.6	98.4	0.0	0.88	0.88	0.67	0.85	3.83	8471	749	8	123	5	3	0	logfile
✔	8D2W	27152	2024-11-15	2022-05-30	3.4	3.58	3.39	3.5	0.012	1.39	0.0	0.05	29.93	0.01	2.277	6.85	0.84	6.5	93.3	0.1	-1.42	0.66	0.78	3.81	3.5	0.003	0.68	0.0	0.04	13.92	0.00	2.501	8.69	1.17	4.9	95.0	0.1	-0.14	1.77	0.74	0.84	3.61	6858	864	6	0	16	5	0	logfile
✔	8D2S	27148	2024-11-15	2022-05-30	2.9	3.02	2.89	3.0	0.012	1.68	0.0	0.05	27.13	0.01	2.297	6.89	0.80	5.0	95.0	0.0	-1.07	0.70	0.81	4.71	3.0	0.003	0.62	0.0	0.04	14.66	0.00	2.364	8.97	1.92	4.6	95.4	0.0	0.34	0.99	0.71	0.81	3.99	7071	879	5	0	21	27	0	logfile
✔	8D2V	27151	2024-11-15	2022-05-30	4.1	4.15	3.87	4.1	0.010	1.27	0.0	0.05	28.64	0.01	2.262	6.24	0.75	6.2	93.8	0.0	-1.27	0.63	0.75	—	4.1	0.003	0.67	0.0	0.04	13.03	0.01	2.383	8.05	0.19	4.7	95.3	0.0	0.22	1.07	0.69	0.76	—	6388	864	4	0	10	0	0	logfile
✔	8D2L	27142	2024-11-17	2022-05-30	2.21	2.13	2.67	2.2	0.005	0.88	3.0	0.05	19.80	0.01	2.031	3.65	0.00	1.8	98.2	0.0	-0.15	0.69	0.86	5.22	2.2	0.004	0.59	0.0	0.04	20.52	0.00	1.912	7.25	1.09	1.5	98.5	0.0	1.33	0.28	0.69	0.87	4.92	12227	1105	13	149	11	341	0	logfile
✔	8D2Q	27146	2024-11-15	2022-05-30	2.58	2.06	2.50	2.5	0.006	0.97	1.0	0.05	20.82	0.01	2.113	5.23	0.00	3.5	96.5	0.0	-1.68	0.60	0.79	4.32	2.5	0.004	0.64	0.0	0.04	21.31	0.00	2.002	9.09	1.62	3.6	96.4	0.0	0.38	0.40	0.60	0.81	4.14	9721	906	8	122	5	2	0	logfile
✔	7XXB	33500	2024-11-16	2022-05-29	2.93	2.97	2.96	3.1	0.004	0.68	0.0	0.09	12.24	0.00	1.977	9.21	0.00	3.1	96.9	0.0	0.68	0.55	0.76	2.33	3.1	0.003	0.60	0.0	0.08	14.92	0.00	2.425	6.72	1.10	3.2	96.8	0.0	1.40	0.41	0.56	0.78	1.63	12038	754	4	0	2	0	6138	logfile
✔	8A0E	15052	2024-11-16	2022-05-27	2.8	3.09	2.92	3.0	0.003	0.60	0.0	0.04	14.46	0.00	2.176	2.58	0.00	1.7	98.3	0.0	-0.22	0.76	0.89	4.52	3.0	0.002	0.52	0.0	0.04	15.36	0.00	2.467	2.45	0.70	1.8	98.2	0.0	0.60	0.30	0.75	0.90	4.00	12082	1526	9	0	7	0	0	logfile
✔	8D1B	27121	2024-11-14	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.025	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.005	0.89	0.0	0.04	16.57	0.01	2.435	10.30	2.08	18.4	81.6	0.0	-4.80	2.73	0.73	0.79	2.10	6724	874	4	0	0	0	0	logfile
✔	8D1K	27133	2024-11-18	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.33	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.003	0.55	0.0	0.04	17.30	0.00	2.284	4.40	1.06	1.4	98.6	0.0	1.43	0.38	0.65	0.88	3.70	16305	1880	10	0	45	0	0	logfile
✔	8D21	27139	2024-11-18	2022-05-27	3.96	4.57	3.97	4.2	0.004	0.69	0.0	0.04	17.33	0.01	2.068	5.05	0.64	6.2	93.7	0.1	-1.51	0.86	0.85	2.01	4.2	0.004	0.68	0.0	0.04	16.39	0.01	2.431	7.78	3.55	5.8	94.0	0.1	-0.58	0.64	0.86	0.86	1.66	17541	2181	18	0	30	0	0	logfile
✔	8D1L	27134	2024-11-18	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.69	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.54	0.0	0.04	16.80	0.00	2.310	4.95	1.30	2.0	98.0	0.0	1.86	0.41	0.63	0.86	4.08	16306	1880	10	0	46	0	0	logfile

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