Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D3X	27167	2024-11-18	2022-06-01	4.1	3.74	4.08	3.8	0.003	0.69	2.0	0.06	14.47	0.00	1.492	14.67	0.27	4.4	95.3	0.3	-0.48	0.57	0.78	—	3.8	0.003	0.59	0.0	0.04	14.61	0.00	2.387	8.90	0.00	4.2	95.8	0.0	-0.12	0.91	0.57	0.79	—	10219	1305	4	0	1	0	0	logfile
✔	8D4B	27180	2024-11-16	2022-06-01	2.92	3.58	2.96	3.3	0.005	0.70	0.0	0.04	16.40	0.00	1.942	5.37	0.00	2.2	97.8	0.0	-1.63	0.86	0.83	4.41	3.3	0.002	0.52	0.0	0.04	17.33	0.00	2.186	7.96	0.76	2.1	97.9	0.0	0.74	0.52	0.84	0.87	3.38	11010	1166	3	69	0	0	0	logfile
✔	8D3V	27165	2024-11-18	2022-06-01	3.4	2.99	3.31	3.3	0.003	0.49	0.0	0.04	14.47	0.00	2.143	6.74	0.00	4.6	95.4	0.0	-1.13	0.58	0.79	2.56	3.3	0.004	0.99	1.0	0.05	15.56	0.00	1.653	6.64	1.19	4.5	95.5	0.0	0.00	0.29	0.58	0.78	2.21	10011	1279	3	0	0	0	0	logfile
✔	8D49	27178	2024-11-15	2022-06-01	3.2	3.92	3.27	3.7	0.009	0.84	3.0	0.05	16.10	0.01	2.098	6.45	1.14	4.0	95.9	0.1	-0.72	0.86	0.85	3.17	3.7	0.003	0.51	0.0	0.04	16.58	0.00	2.516	4.32	0.52	2.9	97.1	0.0	1.12	1.93	0.83	0.81	2.55	9281	1072	2	26	0	0	0	logfile
✔	8D3Y	27168	2024-11-15	2022-06-01	3.9	3.70	3.84	3.7	0.007	0.81	0.0	0.04	17.34	0.01	2.198	10.16	0.19	6.7	93.3	0.0	-0.14	0.60	0.81	1.42	3.7	0.002	0.60	0.0	0.04	17.75	0.00	2.545	7.01	4.37	5.2	94.7	0.1	0.28	0.36	0.60	0.81	1.15	9898	1298	3	0	0	0	0	logfile
✔	7XY9	33514	2024-11-16	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.66	0.0	0.05	17.35	0.00	1.884	4.02	2.23	4.4	95.6	0.0	-0.18	0.85	0.75	0.87	5.40	10962	1376	12	0	12	574	0	logfile
✔	7XYF	33520	2024-11-18	2022-06-01	4.3	4.47	3.32	4.3	0.008	0.93	0.0	0.05	27.11	0.01	2.217	13.45	2.14	4.9	95.1	0.0	-4.98	0.87	0.81	—	4.3	0.004	0.70	0.0	0.04	25.80	0.00	2.017	16.51	0.08	4.7	95.3	0.0	-0.14	0.80	0.88	0.81	—	17321	1418	11	292	0	0	0	logfile
✔	7XYC	33519	2024-11-17	2022-06-01	3.8	3.92	—	3.9	0.002	0.63	0.0	0.05	13.85	0.00	2.237	10.77	0.00	7.1	92.7	0.2	-1.79	0.82	0.85	1.61	3.9	0.003	0.62	0.0	0.05	15.95	0.00	2.463	7.32	4.53	8.6	91.4	0.1	-1.91	0.41	0.77	0.85	1.96	12621	1686	3	0	0	0	0	logfile
✔	7XYM	33522	2024-11-17	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.004	1.03	0.0	0.05	16.52	0.01	2.132	19.03	1.29	23.9	74.2	1.9	-4.60	1.43	0.69	0.78	2.13	11436	1464	3	0	0	0	0	logfile
✔	8D33	27154	2024-11-18	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	7XY7	33513	2024-11-14	2022-05-31	3.26	2.43	3.29	2.2	0.003	0.58	0.0	0.04	15.86	0.00	2.141	5.62	0.40	2.0	98.0	0.0	1.03	0.77	0.78	2.13	2.2	0.004	0.55	0.0	0.04	16.36	0.00	2.519	3.48	3.17	2.5	97.5	0.0	1.37	1.01	0.77	0.79	1.78	7047	895	5	0	1	0	0	logfile
✔	8D37	27155	2024-11-18	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.005	0.89	1.0	0.04	18.30	0.01	2.075	11.37	4.13	3.9	96.1	0.0	0.54	0.73	0.67	0.74	1.51	15314	1784	6	48	2	0	0	logfile
✔	7XY1	33507	2024-11-16	2022-05-31	3.3	3.36	—	3.3	0.005	0.76	6.0	0.06	13.22	0.01	2.035	16.43	0.97	8.4	91.0	0.6	-2.22	0.76	0.83	3.69	3.3	0.003	0.63	0.0	0.05	15.08	0.00	2.474	8.33	1.62	9.3	90.5	0.2	-2.43	0.33	0.78	0.85	2.94	11550	1536	3	0	0	0	0	logfile
✔	8D2N	27143	2024-11-16	2022-05-30	2.88	2.50	2.55	2.8	0.004	0.94	0.0	0.05	20.41	0.01	2.129	5.17	0.00	4.8	95.1	0.1	-1.94	0.60	0.72	2.56	2.8	0.004	0.65	0.0	0.04	20.84	0.00	1.950	10.10	1.64	4.6	95.4	0.0	-0.52	0.36	0.63	0.76	2.40	11414	1105	5	128	1	0	0	logfile
✔	8D2U	27150	2024-11-15	2022-05-30	3.3	3.47	3.31	3.4	0.012	1.45	0.0	0.05	27.08	0.01	2.344	6.69	0.99	6.5	93.5	0.0	-2.64	0.66	0.79	3.97	3.4	0.003	0.62	0.0	0.04	13.63	0.00	2.458	8.52	2.63	6.0	94.0	0.0	-0.01	0.54	0.69	0.83	3.72	6862	864	7	0	18	5	0	logfile
✔	8D2T	27149	2024-11-15	2022-05-30	3.4	3.60	3.42	3.5	0.011	1.10	0.0	0.05	27.92	0.01	2.257	6.54	0.51	6.9	93.1	0.0	-0.99	0.70	0.79	4.07	3.5	0.003	0.71	0.0	0.04	13.42	0.00	2.200	9.08	2.23	5.4	94.6	0.0	0.05	1.02	0.70	0.78	3.08	6609	864	6	0	10	4	0	logfile
✔	8D2V	27151	2024-11-15	2022-05-30	4.1	4.15	3.87	4.1	0.010	1.27	0.0	0.05	28.64	0.01	2.262	6.24	0.75	6.2	93.8	0.0	-1.27	0.63	0.75	—	4.1	0.003	0.67	0.0	0.04	13.03	0.01	2.383	8.05	0.19	4.7	95.3	0.0	0.22	1.07	0.69	0.76	—	6388	864	4	0	10	0	0	logfile
✔	8D2P	27145	2024-11-16	2022-05-30	2.78	2.32	2.66	2.7	0.005	0.81	0.0	0.05	18.65	0.01	2.018	3.73	0.00	1.9	98.1	0.0	-1.23	0.63	0.82	4.10	2.7	0.005	0.63	0.0	0.04	19.82	0.01	1.830	8.39	1.53	2.2	97.8	0.0	0.46	0.34	0.64	0.84	3.73	11436	1105	8	125	11	36	0	logfile
✔	8D2L	27142	2024-11-17	2022-05-30	2.21	2.13	2.67	2.2	0.005	0.88	3.0	0.05	19.80	0.01	2.031	3.65	0.00	1.8	98.2	0.0	-0.15	0.69	0.86	5.22	2.2	0.004	0.59	0.0	0.04	20.52	0.00	1.912	7.25	1.09	1.5	98.5	0.0	1.33	0.28	0.69	0.87	4.92	12227	1105	13	149	11	341	0	logfile
✔	8D2K	27141	2024-11-17	2022-05-30	2.43	2.17	2.40	2.4	0.006	0.91	0.0	0.05	20.18	0.01	2.000	3.93	0.00	1.5	98.5	0.0	-0.18	0.66	0.84	4.54	2.4	0.003	0.58	0.0	0.04	20.97	0.00	1.934	8.23	0.66	1.5	98.5	0.0	1.32	0.29	0.66	0.85	4.31	12295	1105	13	154	11	300	0	logfile

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