Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZZ0	15030	2024-11-14	2022-05-25	2.26	2.63	2.22	2.1	0.004	0.71	0.0	0.05	16.82	0.00	2.149	3.28	1.96	1.9	98.1	0.0	-0.34	0.92	0.91	4.41	2.1	0.003	0.53	0.0	0.04	16.82	0.00	2.073	3.28	2.40	1.9	98.1	0.0	1.45	0.22	0.92	0.91	4.56	4387	541	2	0	2	84	0	logfile
✔	7ZZ2	15032	2024-11-14	2022-05-25	2.48	2.80	2.37	2.1	0.005	0.76	0.0	0.05	17.25	0.01	2.132	4.21	3.27	2.2	97.8	0.0	-0.30	0.90	0.89	3.91	2.1	0.003	0.54	0.0	0.04	17.27	0.00	2.095	4.68	1.96	1.7	98.3	0.0	1.54	1.09	0.90	0.90	3.66	4366	541	2	0	3	57	0	logfile
✔	7ZZ5	15035	2024-11-14	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.81	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.003	0.61	0.0	0.04	17.36	0.00	2.466	7.46	1.86	3.5	96.5	0.0	0.58	0.27	0.89	0.88	4.09	3633	461	2	0	2	0	0	logfile
✔	7ZZ1	15031	2024-11-14	2022-05-25	2.27	2.59	2.22	2.1	0.007	0.89	0.0	0.05	18.25	0.01	2.159	3.90	2.68	2.6	97.4	0.0	-1.05	0.91	0.90	4.22	2.1	0.004	0.64	0.0	0.04	17.82	0.00	2.074	6.66	2.68	2.6	97.4	0.0	0.99	1.10	0.91	0.90	4.26	4958	618	5	0	4	55	0	logfile
✔	7ZYZ	15029	2024-11-14	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.61	0.0	0.04	18.33	0.00	2.122	6.90	2.61	2.6	97.4	0.0	0.94	0.40	0.88	0.88	3.44	4349	541	2	0	2	38	0	logfile
✔	7ZYV	15027	2024-11-19	2022-05-25	2.13	2.84	2.17	2.6	0.007	0.70	0.0	0.05	20.58	0.01	1.927	11.83	2.20	3.9	96.1	0.0	0.99	0.78	0.90	3.60	2.6	0.004	0.70	0.0	0.05	17.45	0.01	2.472	3.32	1.53	3.2	96.8	0.0	1.46	0.38	0.78	0.92	3.17	16452	1946	29	0	32	0	0	logfile
✔	7ZYL	15026	2024-11-14	2022-05-25	2.08	2.56	2.12	2.4	0.022	0.98	0.0	0.05	24.65	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.003	0.59	0.0	0.04	20.03	0.00	2.595	4.50	1.67	0.8	99.2	0.0	0.47	0.34	0.79	0.90	6.49	3992	484	12	0	12	0	0	logfile
✔	7ZYi	15024	2024-11-14	2022-05-24	2.88	2.74	2.96	2.8	0.013	0.75	0.0	0.09	18.28	0.00	2.152	8.60	0.69	2.8	97.2	0.0	1.17	0.49	0.82	2.41	2.9	0.004	0.61	0.0	0.04	15.72	0.00	2.352	5.16	2.34	3.3	96.7	0.0	1.10	0.76	0.50	0.84	2.44	6641	852	5	0	6	1	0	logfile
✔	8CZi	27098	2024-11-14	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	8CZD	27095	2024-11-18	2022-05-24	4.6	4.07	4.58	4.4	0.005	0.90	0.0	0.05	16.56	0.00	2.121	23.70	0.00	8.7	91.3	0.0	-0.30	0.46	0.65	—	4.2	0.004	0.88	0.0	0.05	15.86	0.01	2.484	20.59	0.00	7.7	92.3	0.0	-0.99	1.66	0.44	0.63	—	17640	2120	20	0	0	0	0	logfile
✔	7ZYG	15022	2024-11-15	2022-05-24	2.68	3.62	2.80	3.4	0.002	0.46	0.0	0.04	16.31	0.00	2.263	3.82	0.00	2.3	97.7	0.0	0.57	0.69	0.83	3.24	3.4	0.006	0.66	0.0	0.04	18.11	0.00	2.483	5.94	1.08	3.8	96.2	0.0	0.78	0.75	0.69	0.83	2.66	8914	1039	7	30	1	0	0	logfile
✔	8CYV	27085	2024-11-14	2022-05-24	3.5	3.17	3.47	3.7	0.003	0.61	0.0	0.05	10.01	0.00	2.423	5.36	0.00	5.9	94.1	0.0	-4.11	0.58	0.72	2.74	3.4	0.003	0.69	0.0	0.05	16.22	0.00	2.429	8.20	3.67	5.6	93.9	0.5	-4.03	1.31	0.59	0.75	2.75	5964	864	12	0	0	0	0	logfile
✔	8CYR	27082	2024-11-14	2022-05-24	4.2	3.54	3.92	4.0	0.003	0.62	0.0	0.05	8.97	0.00	2.654	0.08	2.00	4.4	95.6	0.0	-2.37	0.46	0.55	—	3.9	0.004	0.75	0.0	0.05	12.56	0.00	2.410	11.21	0.00	8.2	91.8	0.0	-3.29	2.76	0.53	0.68	—	5964	864	12	0	0	0	0	logfile
✔	8CZE	27096	2024-11-16	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.81	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.005	0.59	0.0	0.04	26.58	0.00	2.494	3.37	0.79	3.3	96.7	0.0	2.29	0.26	0.85	0.86	2.83	12029	763	10	292	0	0	0	logfile
✔	7ZYJ	15025	2024-11-18	2022-05-24	2.7	3.45	2.80	3.0	0.003	0.54	0.0	0.04	13.26	0.00	2.158	7.10	0.06	3.0	97.0	0.0	0.56	0.89	0.85	4.15	3.0	0.006	0.65	1.0	0.05	15.24	0.00	2.259	6.27	0.90	3.1	96.9	0.0	1.19	1.78	0.89	0.93	3.63	49234	6362	30	0	2	0	0	logfile
✔	7ZXY	15017	2024-11-18	2022-05-23	3.15	2.97	3.04	3.0	0.006	0.94	0.0	0.05	16.23	0.01	2.106	10.77	0.00	3.5	96.5	0.0	-0.44	0.74	0.81	3.20	3.0	0.004	0.68	0.0	0.04	15.90	0.00	2.485	7.98	0.97	3.4	96.6	0.0	0.37	0.31	0.75	0.85	2.54	15606	1913	25	0	23	0	0	logfile
✔	8CYJ	27080	2024-11-16	2022-05-23	3.6	4.32	3.59	3.6	0.003	0.62	0.0	0.04	14.18	0.01	2.056	7.59	0.00	6.7	92.5	0.9	-0.91	0.79	0.57	1.23	3.8	0.004	0.70	0.0	0.04	16.21	0.01	2.360	13.21	3.11	11.4	87.8	0.7	-1.96	0.84	0.81	0.64	0.58	10575	701	5	0	0	0	5089	logfile
✔	7XVG	33486	2024-11-14	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.92	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.70	0.0	0.04	16.27	0.00	2.380	8.90	2.90	5.0	95.0	0.0	-0.61	0.51	0.74	0.77	1.30	6438	794	2	0	0	0	0	logfile
✔	7ZXP	15013	2024-11-19	2022-05-22	2.39	2.72	2.35	2.5	0.002	0.42	0.0	0.04	14.73	0.00	2.030	3.46	1.17	1.1	98.9	0.0	4.20	0.72	0.87	3.52	2.6	0.003	0.43	0.0	0.04	15.66	0.00	2.659	3.27	1.85	1.1	98.9	0.0	4.59	0.91	0.64	0.90	3.42	18420	2292	12	0	0	0	0	logfile
✔	8CXo	27062	2024-11-14	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.10	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.78	0.0	0.04	15.60	0.00	2.336	12.41	3.88	3.8	96.2	0.0	1.65	2.08	0.61	0.80	0.92	4392	551	2	0	1	0	0	logfile

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