Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CXG	27055	2024-11-19	2022-05-21	3.2	3.80	3.18	3.6	0.008	0.96	9.0	0.06	12.57	0.01	1.081	28.53	2.73	8.8	90.8	0.4	-2.16	0.46	0.72	1.89	3.6	0.004	0.76	0.0	0.04	15.66	0.01	2.448	8.64	4.04	9.9	90.1	0.0	-0.70	1.63	0.44	0.81	1.49	18381	2399	12	0	0	0	0	logfile
✔	8CXi	27058	2024-11-18	2022-05-21	3.4	3.96	3.26	3.9	0.008	0.97	5.0	0.09	14.27	0.01	0.857	26.16	3.00	9.6	89.7	0.7	-2.57	0.43	0.75	1.93	3.9	0.005	0.82	0.0	0.05	15.98	0.00	2.330	9.34	3.06	10.6	89.2	0.1	-1.37	1.23	0.30	0.74	1.41	16832	2196	12	0	8	0	0	logfile
✔	7ZXo	15012	2024-11-18	2022-05-21	2.5	2.89	2.54	2.7	0.003	0.52	0.0	0.04	15.39	0.01	2.030	2.71	1.36	0.0	100.0	0.0	4.19	0.72	0.88	3.47	2.7	0.003	0.48	0.0	0.04	16.19	0.00	2.641	3.09	0.94	1.1	98.9	0.0	4.13	0.62	0.64	0.91	3.17	17016	2124	12	0	0	0	0	logfile
✔	7ZXN	15011	2024-11-20	2022-05-21	3.06	2.82	3.05	3.1	0.005	0.78	0.0	0.06	12.93	0.02	2.173	11.52	0.00	4.4	95.6	0.0	2.95	0.56	0.79	1.24	3.1	0.002	0.50	0.0	0.04	15.00	0.00	2.387	2.84	1.34	3.4	96.6	0.0	4.27	1.28	0.60	0.86	2.31	20466	1242	12	0	6	0	10278	logfile
✔	8CXH	27056	2024-11-18	2022-05-21	3.2	3.54	2.91	3.4	0.008	0.90	5.0	0.06	13.14	0.01	0.938	26.23	2.74	9.6	90.0	0.4	-2.57	0.52	0.81	2.39	3.5	0.004	0.68	0.0	0.04	15.88	0.00	2.416	7.33	3.19	8.6	91.3	0.1	-1.06	1.60	0.51	0.86	2.09	16634	2178	10	0	0	0	0	logfile
✔	7ZX8	15007	2024-11-18	2022-05-20	3.0	3.43	3.02	3.0	0.005	0.61	0.0	0.04	17.02	0.00	1.635	8.49	0.15	4.0	96.0	0.0	0.47	0.84	0.80	2.23	3.0	0.004	0.75	0.0	0.04	18.25	0.00	1.948	10.80	1.37	4.0	96.0	0.0	0.40	1.35	0.86	0.85	2.17	49534	5841	32	126	12	0	0	logfile
✔	7ZX7	15006	2024-11-18	2022-05-20	3.4	4.37	3.42	3.0	0.004	0.52	0.0	0.04	17.07	0.00	1.385	9.44	0.00	3.0	97.0	0.0	1.17	0.88	0.76	0.98	3.0	0.004	0.69	0.0	0.04	18.08	0.00	1.979	12.30	1.17	3.8	96.2	0.0	0.68	2.28	0.91	0.84	1.50	49277	5789	32	132	12	0	0	logfile
✔	7ZXE	15009	2024-11-17	2022-05-20	3.5	4.20	3.49	3.6	0.003	0.55	0.0	0.04	19.34	0.00	1.978	8.64	0.00	3.4	96.6	0.0	0.71	0.76	0.76	1.21	3.7	0.003	0.72	0.0	0.04	20.70	0.00	2.430	10.36	1.50	4.4	95.6	0.0	0.74	1.65	0.77	0.81	1.56	14150	1500	11	93	2	0	0	logfile
✔	7XUN	33475	2024-11-14	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.67	0.0	0.05	15.95	0.00	2.491	10.41	2.94	4.6	95.4	0.0	-0.41	0.45	0.73	0.78	0.38	5591	741	1	0	0	0	0	logfile
✔	7XUM	33474	2024-11-14	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.002	0.63	0.0	0.04	16.04	0.00	2.535	7.32	1.63	3.7	96.3	0.0	0.31	0.38	0.56	0.75	0.83	6155	816	2	0	1	0	0	logfile
✔	7XUR	33477	2024-11-14	2022-05-19	3.49	3.71	3.49	3.6	0.005	0.72	0.0	0.04	19.36	0.00	2.207	10.26	0.00	8.8	91.2	0.0	-2.26	0.77	0.78	2.19	3.6	0.003	0.59	0.0	0.04	20.21	0.00	2.520	7.25	0.55	5.2	94.8	0.0	-1.07	0.36	0.77	0.78	2.07	7749	814	6	48	2	0	0	logfile
✔	7ZWD	14997	2024-11-18	2022-05-19	3.0	3.30	3.03	3.0	0.005	0.62	0.0	0.04	17.25	0.00	1.559	7.53	0.02	3.3	96.7	0.0	0.25	0.83	0.79	2.29	3.0	0.004	0.76	0.0	0.04	18.60	0.00	2.129	12.14	1.62	3.5	96.5	0.0	0.38	1.38	0.85	0.84	2.04	49279	5789	32	132	12	0	0	logfile
✔	8CX1	27033	2024-11-18	2022-05-19	3.3	4.00	3.27	2.9	0.004	0.65	0.0	0.04	14.85	0.00	2.244	4.34	0.06	2.7	97.3	0.0	0.14	0.79	0.65	2.34	3.0	0.007	0.78	0.0	0.04	16.37	0.00	2.311	12.44	1.56	3.8	96.2	0.0	0.46	3.57	0.87	0.81	2.16	15184	1781	16	16	6	0	0	logfile
✔	8CX0	27032	2024-11-14	2022-05-19	2.7	3.46	2.59	3.0	0.006	0.70	0.0	0.05	14.18	0.00	2.270	2.23	0.00	3.0	97.0	0.0	0.97	0.87	0.84	3.62	3.0	0.003	0.72	0.0	0.04	15.97	0.01	2.397	7.69	1.25	2.9	97.1	0.0	1.31	2.48	0.88	0.88	3.23	7575	889	8	8	3	0	0	logfile
✔	8CX2	27034	2024-11-18	2022-05-19	3.2	3.94	3.21	3.2	0.004	0.57	0.0	0.04	15.04	0.00	2.264	4.01	0.00	2.2	97.8	0.0	0.64	0.83	0.76	2.56	3.3	0.003	0.63	0.0	0.04	16.40	0.00	2.500	7.33	1.64	2.7	97.3	0.0	0.90	1.15	0.85	0.82	2.10	15041	1756	16	18	6	0	0	logfile
✔	7ZWA	14995	2024-11-15	2022-05-19	2.8	3.47	2.87	3.3	0.003	0.51	0.0	0.04	16.75	0.00	2.220	7.51	0.00	4.3	95.7	0.0	0.85	0.77	0.85	3.12	3.3	0.005	0.64	0.0	0.04	18.61	0.00	2.456	7.79	1.28	3.5	96.5	0.0	0.80	0.40	0.78	0.87	2.94	9038	1055	6	31	1	0	0	logfile
✔	8CVY	27021	2024-11-19	2022-05-18	3.6	3.82	3.60	3.8	0.008	1.47	16.0	0.12	15.01	0.01	2.214	10.00	6.05	2.7	97.3	0.0	0.51	0.70	0.79	1.45	3.8	0.003	0.63	0.0	0.04	16.57	0.00	2.427	11.84	2.95	3.2	96.8	0.0	0.65	0.97	0.72	0.78	1.86	17930	2226	7	0	0	0	0	logfile
✔	7XU2	33456	2024-11-20	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	14.46	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.55	2.0	0.06	14.06	0.00	2.190	2.20	0.52	4.8	95.2	0.0	-0.60	0.35	0.85	0.85	3.16	52218	3321	18	0	66	0	25248	logfile
✔	7XU3	33457	2024-11-18	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.22	0.00	2.348	4.34	0.61	4.0	96.0	0.0	-0.29	1.13	0.83	0.84	2.25	47057	3006	15	0	48	0	22838	logfile
✔	7XUF	33467	2024-11-17	2022-05-18	3.3	3.58	3.39	3.6	0.003	0.58	0.0	0.04	14.57	0.00	2.137	4.75	0.00	5.2	94.8	0.0	-1.36	0.58	0.77	2.06	3.6	0.002	0.55	0.0	0.04	16.12	0.00	2.492	3.99	1.18	4.6	95.4	0.0	-0.09	2.60	0.53	0.79	1.76	15041	1864	6	0	3	0	0	logfile

• ← previous
• Page 210 of 420
• next →