Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YEX	39204	2024-11-14	2024-02-23	3.68	3.97	3.75	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.66	0.0	0.04	17.34	0.00	2.431	10.73	2.72	5.4	94.6	0.0	1.43	0.46	0.54	0.73	1.08	6532	784	2	0	0	0	0	logfile
✔	9ARi	43783	2024-11-20	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.004	0.70	0.0	0.04	12.76	0.00	2.439	7.07	5.87	8.4	91.6	0.0	-1.04	1.23	0.70	0.72	1.23	20756	3178	6	0	0	0	0	logfile
✔	9ARE	43779	2024-11-19	2024-02-23	3.72	4.00	3.78	3.9	0.007	0.98	36.0	0.07	11.57	0.01	2.020	10.72	5.24	4.8	95.1	0.1	-2.47	0.65	0.65	1.31	3.9	0.005	0.67	0.0	0.04	13.01	0.00	2.509	4.46	5.90	6.2	93.8	0.0	0.17	0.52	0.68	0.71	1.53	19222	3172	8	0	0	0	0	logfile
✔	8YE6	39190	2024-11-17	2024-02-22	2.95	3.10	2.95	3.1	0.010	1.07	0.0	0.06	15.48	0.01	2.259	3.40	0.16	5.4	94.6	0.0	-4.09	0.71	0.80	4.13	3.1	0.002	0.59	0.0	0.04	18.02	0.00	2.286	5.08	2.16	2.5	97.5	0.0	0.48	0.68	0.72	0.81	2.89	13603	1447	3	92	0	0	0	logfile
✔	8YE9	39191	2024-11-17	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8S4U	19716	2024-11-14	2024-02-22	3.09	3.17	2.95	3.1	0.006	0.65	1.0	0.05	14.85	0.01	2.272	7.16	0.24	4.2	95.8	0.0	-0.73	0.61	0.80	2.33	3.1	0.004	0.63	0.0	0.04	15.60	0.00	2.595	5.53	3.31	2.8	97.2	0.0	1.37	0.33	0.66	0.84	2.58	3980	502	3	0	1	0	0	logfile
✔	8W35	43762	2024-11-13	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	8W2H	43748	2024-11-17	2024-02-20	2.6	2.65	2.66	2.7	0.009	1.22	0.0	0.05	14.68	0.01	2.013	3.69	0.53	3.3	96.6	0.1	-0.06	0.64	0.80	4.17	2.7	0.004	0.58	0.0	0.04	17.21	0.00	1.884	4.73	2.45	2.1	97.9	0.0	1.10	1.28	0.59	0.81	3.31	46944	3044	8	0	20	0	23240	logfile
✔	8W22	43737	2024-11-14	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.1	0.004	0.69	0.0	0.04	12.25	0.00	2.610	3.36	3.89	5.2	94.8	0.0	-0.02	0.76	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8S37	19690	2024-11-18	2024-02-19	2.9	4.24	3.10	3.6	0.004	0.66	0.0	0.04	16.55	0.01	2.017	9.09	0.90	0.3	99.6	0.1	-1.05	0.89	0.82	2.07	3.6	0.005	0.67	0.0	0.04	17.44	0.00	2.262	10.36	1.02	5.2	94.6	0.1	0.50	0.41	0.90	0.82	2.17	49005	2947	13	107	1	0	23920	logfile
✔	8S35	19688	2024-11-18	2024-02-19	2.9	4.25	3.12	3.6	0.004	0.73	0.0	0.04	18.95	0.00	1.971	9.69	0.82	0.3	99.7	0.0	-0.29	0.90	0.82	1.67	3.6	0.003	0.64	0.0	0.04	19.27	0.00	2.233	11.14	0.98	4.4	95.6	0.0	0.23	0.37	0.90	0.82	1.93	48653	2936	13	112	1	0	23571	logfile
✔	8W20	43736	2024-11-18	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.005	0.72	0.0	0.04	8.29	0.00	2.587	3.17	0.00	4.6	95.4	0.0	1.21	1.83	0.70	0.72	—	15412	2814	11	0	0	0	0	logfile
✔	8S36	19689	2024-11-18	2024-02-19	2.9	4.24	3.06	3.7	0.004	0.73	0.0	0.04	18.44	0.01	1.959	10.07	0.81	0.5	99.4	0.1	-1.16	0.89	0.81	1.87	3.6	0.005	0.66	0.0	0.04	18.69	0.00	2.261	10.11	1.10	4.4	95.5	0.1	0.35	1.17	0.89	0.82	1.89	47348	2838	13	108	1	0	23099	logfile
✔	8YC0	39128	2024-11-14	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.76	0.0	0.04	14.05	0.00	2.455	12.03	0.00	7.4	92.6	0.0	-0.77	1.32	0.61	0.73	—	4635	583	9	0	1	0	0	logfile
✔	8YBQ	39121	2024-11-16	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.57	0.0	0.04	14.21	0.00	2.630	1.67	1.68	2.1	97.9	0.0	1.39	1.26	0.63	0.86	2.41	11700	1506	9	0	3	66	0	logfile
✔	8YBR	39122	2024-11-18	2024-02-16	2.57	2.26	2.59	2.1	0.005	0.67	0.0	0.04	12.45	0.00	2.237	3.61	0.70	6.3	93.7	0.0	-4.55	0.82	0.81	2.58	2.0	0.003	0.63	0.0	0.04	15.05	0.00	2.535	2.55	1.47	5.3	94.7	0.0	-0.10	0.55	0.84	0.85	2.79	15150	1941	3	0	0	0	0	logfile
✔	8W0R	43712	2024-11-14	2024-02-14	2.8	2.89	2.83	2.9	0.005	0.71	0.0	0.11	12.17	0.01	2.073	0.57	0.00	2.4	97.6	0.0	0.55	0.61	0.77	3.21	2.9	0.003	0.52	0.0	0.04	14.71	0.00	2.658	5.57	0.54	1.9	98.1	0.0	2.46	1.74	0.59	0.78	3.01	3556	426	4	0	2	0	0	logfile
✔	8YBJ	39119	2024-11-16	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8YBK	39120	2024-11-16	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8W0P	43711	2024-11-19	2024-02-13	3.26	4.11	3.49	3.5	0.003	0.63	0.0	0.04	14.73	0.00	2.158	10.53	0.14	4.3	95.4	0.2	-0.11	0.82	0.70	2.15	3.6	0.003	0.54	0.0	0.04	15.43	0.00	2.390	7.39	0.62	4.6	95.3	0.2	0.75	0.40	0.89	0.85	1.71	19116	2307	5	0	2	0	0	logfile

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