Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CUJ	27001	2024-11-14	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.003	0.55	0.0	0.04	15.75	0.00	2.627	5.46	3.60	2.1	97.9	0.0	1.57	0.89	0.44	0.80	1.70	3293	433	2	0	0	1	0	logfile
✔	8CUA	26997	2024-11-15	2022-05-17	2.44	2.61	2.45	2.8	0.003	0.58	0.0	0.04	15.57	0.00	1.957	4.39	0.00	1.8	98.2	0.0	2.01	0.64	0.83	1.77	2.8	0.003	0.52	0.0	0.04	16.21	0.00	2.620	3.37	1.34	1.3	98.7	0.0	2.39	0.31	0.62	0.84	1.70	9534	1248	9	0	6	30	0	logfile
✔	7XT8	33442	2024-11-18	2022-05-16	3.1	2.90	2.94	2.9	0.004	0.54	0.0	0.05	14.73	0.00	2.039	5.73	0.00	1.0	99.0	0.0	2.47	0.59	0.77	3.59	2.9	0.003	0.52	0.0	0.04	15.44	0.00	2.282	5.38	1.10	2.1	97.9	0.0	1.67	0.55	0.60	0.81	3.50	16812	1055	6	0	8	0	8287	logfile
✔	7XT9	33443	2024-11-18	2022-05-16	3.2	2.96	2.96	3.0	0.004	0.60	0.0	0.05	13.99	0.00	2.077	5.49	0.00	1.6	98.4	0.0	2.46	0.58	0.75	3.36	3.0	0.002	0.50	0.0	0.04	14.81	0.00	2.399	5.62	1.00	1.9	98.1	0.0	1.88	1.20	0.58	0.79	3.16	14875	927	5	0	7	0	7351	logfile
✔	8CTL	26994	2024-11-15	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	27.58	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.004	0.70	0.0	0.04	24.90	0.00	2.461	9.58	2.59	3.0	97.0	0.0	-1.02	2.47	0.81	0.81	2.68	8138	401	4	233	0	0	0	logfile
✔	7XTA	33444	2024-11-18	2022-05-16	3.2	2.43	3.07	3.1	0.003	0.54	0.0	0.04	12.65	0.00	2.030	6.18	0.00	1.8	98.2	0.0	1.64	0.68	0.71	2.44	2.9	0.004	0.57	0.0	0.04	15.37	0.00	2.414	7.15	1.87	3.4	96.6	0.0	0.80	0.59	0.70	0.75	2.31	17478	1115	6	0	1	0	8707	logfile
✔	7XT4	33439	2024-11-18	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	19.00	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.003	0.76	0.0	0.04	19.49	0.00	1.106	6.61	2.64	4.5	95.5	0.0	0.62	1.44	0.80	0.82	3.12	16850	1939	5	55	4	0	0	logfile
✔	7XTB	33445	2024-11-15	2022-05-16	3.3	3.54	3.40	3.5	0.003	0.48	0.0	0.04	13.54	0.00	1.996	5.44	0.00	1.6	98.4	0.0	2.17	0.65	0.77	1.53	3.5	0.003	0.59	0.0	0.04	15.77	0.00	2.431	5.44	2.75	1.8	98.2	0.0	1.47	0.49	0.65	0.82	1.85	8101	1037	6	0	1	0	0	logfile
✔	7XSo	33429	2024-11-16	2022-05-15	3.01	2.21	2.88	2.1	0.009	1.02	4.0	0.07	18.96	0.01	2.157	4.29	3.99	6.0	94.0	0.1	-2.97	0.80	0.81	3.02	2.1	0.003	0.60	0.0	0.04	19.62	0.00	2.463	3.59	2.63	5.2	94.8	0.0	-0.21	0.52	0.81	0.83	3.01	10971	1271	3	35	4	0	0	logfile
✔	7XSQ	33431	2024-11-18	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.82	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	2.0	0.004	0.86	0.0	0.05	19.72	0.01	2.237	5.18	2.74	5.3	94.7	0.1	0.31	1.08	0.81	0.83	3.16	16573	1967	4	34	4	0	0	logfile
✔	8CTK	26993	2024-11-14	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.67	0.0	0.04	15.23	0.00	2.470	7.44	3.48	3.8	96.2	0.0	-0.16	1.08	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7XSR	33432	2024-11-18	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	18.28	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.004	0.66	0.0	0.04	19.25	0.00	2.448	5.25	3.65	5.6	94.3	0.1	0.03	0.55	0.80	0.83	2.80	16907	1963	5	49	4	0	0	logfile
✔	7XSP	33430	2024-11-16	2022-05-15	2.89	2.19	2.82	2.1	0.006	0.85	0.0	0.06	18.79	0.01	2.303	3.41	3.42	5.6	94.2	0.2	-2.85	0.80	0.81	3.27	2.1	0.003	0.62	0.0	0.04	19.76	0.00	2.387	4.46	3.33	5.2	94.7	0.1	-0.14	0.52	0.82	0.84	3.20	11317	1271	4	50	4	0	0	logfile
✔	7XSS	33433	2024-11-18	2022-05-15	3.2	2.32	3.17	2.1	0.003	0.61	0.0	0.04	19.02	0.01	2.143	8.25	0.59	5.7	94.2	0.1	-0.24	0.78	0.79	2.22	2.1	0.003	0.59	0.0	0.04	19.39	0.00	2.483	6.27	3.70	5.9	94.1	0.0	0.07	1.07	0.78	0.80	2.37	16847	1942	5	54	4	0	0	logfile
✔	8CTJ	26992	2024-11-14	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	14.67	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.72	0.0	0.04	14.01	0.00	2.490	13.00	0.00	4.6	95.4	0.0	0.42	1.80	0.50	0.59	—	3312	401	2	0	1	0	0	logfile
✔	7XSL	33426	2024-11-16	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.74	0.01	1.881	26.63	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSM	33427	2024-11-16	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.36	0.01	1.865	41.31	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	8CTi	26991	2024-11-14	2022-05-14	3.6	3.83	3.60	3.7	0.011	0.79	0.0	0.04	20.28	0.00	2.164	11.82	0.49	3.1	96.9	0.0	-1.49	0.67	0.63	1.75	3.7	0.003	0.64	0.0	0.04	20.20	0.00	2.335	13.25	3.41	5.2	94.8	0.0	-0.69	1.99	0.70	0.66	0.92	5297	473	3	71	0	0	0	logfile
✔	8CTH	26990	2024-11-14	2022-05-14	3.3	3.53	3.29	3.5	0.003	0.68	0.0	0.04	19.26	0.01	2.257	11.99	0.00	3.3	96.7	0.0	-1.68	0.64	0.67	1.91	3.6	0.003	0.61	0.0	0.04	18.99	0.00	2.414	9.65	4.49	6.2	93.8	0.0	-1.42	1.24	0.66	0.69	2.13	5544	495	4	74	0	0	0	logfile
✔	7XSN	33428	2024-11-15	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.72	0.00	2.130	17.85	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile

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