Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CTD	26986	2024-11-14	2022-05-14	3.42	3.05	3.37	3.4	0.003	0.63	0.0	0.04	15.42	0.00	2.248	9.77	0.00	2.2	97.8	0.0	0.84	0.45	0.78	1.12	3.3	0.002	0.58	0.0	0.04	16.36	0.00	2.278	6.82	3.80	1.2	98.8	0.0	1.75	1.16	0.45	0.79	1.09	3130	411	2	0	4	0	0	logfile
✔	8CTH	26990	2024-11-14	2022-05-14	3.3	3.53	3.29	3.5	0.003	0.68	0.0	0.04	19.26	0.01	2.257	11.99	0.00	3.3	96.7	0.0	-1.68	0.64	0.67	1.91	3.6	0.003	0.61	0.0	0.04	18.99	0.00	2.414	9.65	4.49	6.2	93.8	0.0	-1.42	1.24	0.66	0.69	2.13	5544	495	4	74	0	0	0	logfile
✔	7XSK	33425	2024-11-16	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.76	0.01	1.907	23.98	0.00	0.0	0.0	0.0	—	1.91	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8CSW	26973	2024-11-14	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.004	0.61	0.0	0.04	16.82	0.00	2.552	4.35	2.15	1.9	98.1	0.0	0.87	0.42	0.63	0.88	5.62	5332	657	2	0	0	165	0	logfile
✔	8CSX	26974	2024-11-15	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	15.46	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.66	0.0	0.04	15.22	0.00	2.535	6.41	3.11	1.9	98.1	0.0	2.15	0.35	0.69	0.88	4.73	9116	1158	8	0	4	150	0	logfile
✔	8CT6	26983	2024-11-18	2022-05-13	3.1	3.35	3.17	3.2	0.004	0.64	0.0	0.05	17.17	0.00	2.240	12.75	1.00	2.8	97.2	0.0	0.03	0.79	0.84	2.39	3.2	0.004	0.78	1.0	0.04	16.25	0.00	2.022	10.79	3.54	2.5	97.5	0.1	0.33	1.10	0.79	0.85	2.30	14918	1857	14	0	23	0	0	logfile
✔	8CSZ	26976	2024-11-15	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	23.81	0.00	1.962	11.72	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.003	0.57	0.0	0.03	23.43	0.00	1.956	7.54	1.41	4.7	95.3	0.0	-0.16	1.11	0.84	0.88	3.48	8948	494	5	236	3	0	0	logfile
✔	8CTC	26985	2024-11-15	2022-05-13	2.8	2.97	2.80	3.2	0.005	0.74	0.0	0.05	14.01	0.00	1.917	4.18	0.00	3.0	97.0	0.0	0.39	0.60	0.80	1.61	3.2	0.003	0.56	0.0	0.04	15.63	0.00	2.177	5.07	3.06	2.9	97.1	0.0	1.29	1.16	0.55	0.79	1.78	9309	1221	12	0	12	12	0	logfile
✔	8CT2	26978	2024-11-14	2022-05-13	3.1	2.85	3.02	2.9	0.004	0.61	0.0	0.04	12.30	0.00	2.209	4.55	2.03	2.6	97.0	0.4	1.50	0.61	0.86	5.28	2.9	0.003	0.55	0.0	0.04	12.93	0.00	2.582	5.80	1.22	3.0	96.6	0.4	2.21	0.25	0.62	0.86	4.73	7464	988	6	0	4	0	0	logfile
✔	8CSV	26972	2024-11-14	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.48	0.0	0.04	15.88	0.00	2.546	4.37	2.33	3.3	96.5	0.2	2.38	0.57	0.56	0.87	4.60	3712	483	3	0	0	48	0	logfile
✔	7XSD	33524	2024-11-18	2022-05-13	3.3	2.86	3.23	2.8	0.009	1.34	0.0	0.06	11.07	0.01	2.253	7.34	0.77	7.2	92.7	0.1	-5.61	0.52	0.52	0.60	2.8	0.003	0.73	0.0	0.04	16.50	0.00	2.481	11.47	3.50	4.9	95.1	0.0	-1.86	1.75	0.57	0.62	1.13	49848	6272	32	0	0	0	0	logfile
✔	8CSY	26975	2024-11-14	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.003	0.54	0.0	0.04	17.34	0.00	2.638	4.67	3.45	1.7	98.3	0.0	1.01	0.47	0.63	0.87	4.33	4638	584	4	0	0	19	0	logfile
✔	7XS7	33423	2024-11-17	2022-05-13	3.2	3.43	3.32	3.4	0.004	0.71	0.0	0.04	14.80	0.00	1.946	3.69	0.16	4.2	95.6	0.3	-2.73	0.69	0.86	3.61	3.4	0.003	0.54	0.0	0.04	15.70	0.00	2.459	1.88	1.32	4.5	95.4	0.1	0.10	0.36	0.67	0.87	2.99	12270	1458	4	0	42	0	0	logfile
✔	7XS6	33422	2024-11-17	2022-05-12	2.9	3.04	2.79	3.0	0.009	0.82	0.0	0.04	15.46	0.00	2.112	6.80	0.61	5.3	94.5	0.2	-1.32	0.69	0.85	3.57	3.0	0.003	0.53	0.0	0.04	16.10	0.00	2.447	5.26	1.37	3.7	96.3	0.0	1.06	0.40	0.66	0.86	2.82	12440	1458	4	0	44	0	0	logfile
✔	7V0T	26950	2024-11-14	2022-05-11	2.7	2.57	2.75	2.6	0.004	0.63	0.0	0.04	19.43	0.00	2.151	6.08	3.45	1.6	98.3	0.2	0.57	0.58	0.85	3.41	2.6	0.003	0.57	0.0	0.04	19.55	0.00	2.600	5.65	3.65	2.1	97.9	0.0	1.13	0.35	0.57	0.86	3.23	4658	584	4	0	0	39	0	logfile
✔	7V0X	26952	2024-11-14	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.004	0.57	0.0	0.04	18.68	0.00	2.620	7.40	3.03	4.6	95.4	0.0	1.73	0.46	0.60	0.88	3.11	2818	375	1	0	0	0	0	logfile
✔	7V0U	26951	2024-11-14	2022-05-11	3.0	2.84	2.93	2.9	0.005	0.75	0.0	0.05	20.37	0.01	2.232	7.29	2.50	1.5	98.5	0.0	0.61	0.64	0.86	3.90	2.9	0.005	0.63	0.0	0.04	20.61	0.00	2.602	8.30	3.33	2.7	97.3	0.0	0.90	0.58	0.62	0.87	3.74	4453	558	3	0	0	2	0	logfile
✔	8CRT	26958	2024-11-18	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	12.63	0.01	2.205	5.06	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.002	0.56	0.0	0.04	14.51	0.00	2.490	8.16	2.09	1.5	98.5	0.0	2.46	0.77	0.51	0.83	2.15	17925	2305	12	0	6	0	0	logfile
✔	7XRP	33416	2024-11-14	2022-05-11	3.88	4.07	3.83	4.0	0.008	1.14	0.0	0.08	14.36	0.02	2.261	4.57	0.45	8.4	91.6	0.0	-4.63	0.53	0.80	2.30	4.0	0.003	0.72	0.0	0.04	16.04	0.00	2.560	9.64	2.93	6.2	93.8	0.0	-3.07	0.69	0.53	0.79	1.77	4129	515	5	0	4	0	0	logfile
✔	7V0Y	26953	2024-11-14	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.003	0.57	0.0	0.04	19.57	0.00	2.536	7.40	3.12	1.6	98.4	0.0	1.18	0.37	0.60	0.86	3.26	4454	558	3	0	0	1	0	logfile

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