Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XRD	33414	2024-11-14	2022-05-10	3.9	3.64	—	3.6	0.002	0.57	0.0	0.04	14.12	0.00	2.012	1.57	0.52	2.0	98.0	0.0	-0.70	0.42	0.75	2.59	3.7	0.003	0.73	0.0	0.05	17.20	0.00	2.015	8.01	1.74	4.0	96.0	0.0	0.41	1.40	0.42	0.77	2.14	5460	656	8	0	8	0	0	logfile
✔	7V0M	26944	2024-11-14	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.13	0.00	2.636	4.51	1.81	3.8	96.2	0.0	2.08	0.48	0.55	0.88	4.37	3724	483	4	0	0	60	0	logfile
✔	7V0Q	26948	2024-11-14	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.52	0.0	0.04	18.63	0.00	2.627	3.38	3.22	1.2	98.8	0.0	1.92	0.25	0.59	0.88	5.59	5301	658	2	0	0	127	0	logfile
✔	7ZTH	14960	2024-11-14	2022-05-10	4.0	4.19	3.99	4.1	0.009	1.07	0.0	0.06	23.04	0.01	2.244	6.78	1.24	10.0	90.0	0.0	-5.31	0.71	0.76	—	4.1	0.003	0.67	0.0	0.04	22.86	0.00	2.495	7.89	3.11	6.9	93.1	0.0	-2.53	0.53	0.71	0.75	—	7620	722	4	82	0	0	0	logfile
✔	7UZS	26917	2024-11-16	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.96	0.00	2.457	2.32	0.89	0.8	99.2	0.0	1.35	0.32	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	7XR4	33407	2024-11-16	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	15.58	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.002	0.52	0.0	0.04	14.83	0.00	2.555	9.67	1.24	0.9	99.1	0.0	3.22	0.37	0.70	0.85	1.46	10026	1278	9	0	27	0	0	logfile
✔	7UZW	26920	2024-11-18	2022-05-09	3.55	4.43	3.43	3.7	0.006	0.77	0.0	0.05	14.77	0.00	1.945	10.42	0.06	6.8	93.2	0.1	-0.88	0.84	0.75	1.73	3.7	0.004	0.70	0.0	0.04	16.89	0.00	2.422	10.22	1.81	5.0	95.0	0.0	0.23	1.49	0.90	0.85	1.54	14754	1760	8	31	0	0	0	logfile
✔	7UZY	26922	2024-11-18	2022-05-09	4.05	5.04	4.10	3.8	0.005	0.76	0.0	0.05	13.95	0.01	1.373	14.50	0.38	4.7	95.2	0.1	-0.62	0.77	0.63	—	3.8	0.003	0.66	0.0	0.04	15.34	0.00	2.339	13.44	0.00	3.4	96.6	0.0	-0.12	1.25	0.83	0.74	—	15332	1781	11	44	0	0	0	logfile
✔	7UZV	26919	2024-11-15	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.59	0.0	0.04	18.92	0.00	2.391	4.45	2.84	2.1	97.7	0.2	1.02	0.28	0.61	0.85	3.79	9274	584	4	0	0	63	4592	logfile
✔	7XQW	33402	2024-11-16	2022-05-09	2.83	3.02	2.85	3.1	0.007	0.79	0.0	0.05	15.55	0.01	1.827	14.96	0.00	5.0	95.0	0.0	-0.75	0.69	0.77	3.84	3.1	0.003	0.66	0.0	0.04	16.97	0.00	2.262	8.31	3.46	4.8	95.2	0.0	-0.57	1.61	0.64	0.77	2.96	10391	1331	4	0	10	0	0	logfile
✔	7ZT6	14955	2024-11-15	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.003	0.63	0.0	0.04	14.39	0.00	2.463	8.77	0.70	2.2	97.8	0.0	0.79	0.74	0.93	0.88	1.89	8073	1031	3	0	1	0	0	logfile
✔	7V00	26924	2024-11-20	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	14.51	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	4.0	0.004	0.70	0.0	0.04	16.51	0.00	2.412	11.95	1.48	4.0	96.0	0.0	0.07	1.08	0.90	0.82	1.44	20420	2430	12	30	2	0	0	logfile
✔	7UZU	26918	2024-11-14	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.50	0.0	0.04	17.61	0.00	2.409	2.73	0.78	3.8	96.2	0.0	2.45	0.19	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	7UZX	26921	2024-11-18	2022-05-09	3.49	4.37	3.42	3.7	0.007	0.91	0.0	0.05	14.91	0.00	1.865	11.12	0.06	7.0	93.0	0.1	-0.88	0.82	0.72	1.88	3.7	0.004	0.66	0.0	0.04	16.58	0.00	2.487	8.62	1.61	4.5	95.5	0.0	0.35	1.84	0.88	0.84	1.66	14858	1760	9	36	0	0	0	logfile
✔	7UZJ	26913	2024-11-18	2022-05-09	3.3	3.46	—	3.4	0.012	1.74	11.0	0.09	13.57	0.01	2.417	0.09	0.68	3.1	96.7	0.2	-0.72	0.75	0.82	3.02	3.4	0.004	0.67	0.0	0.04	16.23	0.00	2.159	5.90	1.64	2.8	97.2	0.0	1.26	2.26	0.77	0.82	2.06	49624	6232	21	0	2	0	0	logfile
✔	7V02	26927	2024-11-18	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	14.12	0.00	2.048	13.24	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.65	0.0	0.04	14.34	0.00	2.373	15.95	0.00	3.5	96.5	0.0	-0.27	1.08	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile
✔	7UZQ	26916	2024-11-20	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	17.12	0.01	2.215	4.59	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.005	0.65	0.0	0.04	15.58	0.00	2.406	5.13	2.55	2.2	97.8	0.1	1.79	0.25	0.69	0.88	5.83	20617	1315	10	0	4	235	10214	logfile
✔	7V01	26925	2024-11-19	2022-05-09	3.67	4.67	3.75	3.9	0.006	0.88	0.0	0.05	15.85	0.00	1.822	14.41	0.47	5.8	94.2	0.0	-1.18	0.83	0.70	1.57	3.9	0.006	0.84	0.0	0.05	17.82	0.00	2.396	17.87	2.00	6.1	93.9	0.0	-0.60	3.20	0.90	0.82	1.38	18492	2128	11	55	2	0	0	logfile
✔	7UZB	26885	2024-11-15	2022-05-08	4.1	4.79	4.12	4.2	0.003	0.60	0.0	0.04	14.48	0.00	2.037	14.67	0.00	3.6	96.4	0.0	0.43	0.90	0.81	—	4.2	0.003	0.59	0.0	0.04	12.76	0.00	2.501	10.41	0.00	3.4	96.6	0.0	0.12	0.94	0.90	0.81	—	8392	1077	4	0	4	0	0	logfile
✔	7XQF	33394	2024-11-18	2022-05-07	2.3	2.69	2.25	2.6	0.005	1.09	0.0	0.04	17.01	0.00	1.942	3.87	0.56	1.6	98.4	0.0	3.06	0.68	0.87	4.51	2.6	0.003	0.54	0.0	0.04	14.68	0.00	2.476	3.41	1.06	2.3	97.7	0.0	3.15	1.04	0.65	0.88	4.39	43140	2412	36	0	168	492	19968	logfile

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