Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SAM	24952	2024-11-14	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	7PSD	13612	2024-11-15	2021-09-22	3.0	3.33	2.96	3.2	0.015	1.12	0.0	0.07	14.39	0.01	2.146	7.65	0.00	5.5	94.5	0.0	-1.38	0.70	0.87	2.60	3.2	0.003	0.62	0.0	0.04	16.08	0.00	2.514	8.69	2.18	2.6	97.4	0.0	1.88	0.41	0.62	0.84	2.52	9032	1160	2	0	0	0	0	logfile
✔	7S9W	24939	2024-11-17	2021-09-21	3.4	3.38	—	3.4	0.011	1.16	1.0	0.05	15.91	0.01	2.308	2.86	0.47	2.3	97.7	0.1	-0.94	0.64	0.78	1.96	3.4	0.002	0.58	0.0	0.04	16.40	0.00	2.499	3.15	2.01	2.3	97.7	0.0	0.40	0.32	0.62	0.77	1.89	14052	1767	4	7	1	0	0	logfile
✔	7PQG	13593	2024-11-14	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	7PR1	13607	2024-11-15	2021-09-20	2.81	3.22	2.90	3.1	0.007	0.95	0.0	0.05	14.35	0.00	2.053	7.90	0.00	2.1	97.9	0.0	-0.18	0.63	0.83	3.36	3.1	0.004	0.62	0.0	0.04	16.61	0.00	2.171	8.33	1.85	1.7	98.3	0.0	1.86	0.95	0.58	0.81	2.53	9222	1174	4	0	4	0	0	logfile
✔	7VH1	31983	2024-11-17	2021-09-20	4.2	4.15	—	4.0	0.009	1.32	0.0	0.07	12.24	0.01	2.222	5.93	0.74	11.9	87.8	0.2	-5.32	0.79	0.75	—	4.0	0.003	0.75	0.0	0.04	12.72	0.00	2.360	9.42	0.07	7.9	92.1	0.0	-1.67	3.32	0.79	0.75	—	13156	1661	3	0	2	0	0	logfile
✔	7S9D	24933	2024-11-16	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.003	0.66	0.0	0.04	12.02	0.00	2.619	8.94	0.00	7.9	91.8	0.3	-0.79	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7PQX	13606	2024-11-15	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.003	0.64	0.0	0.04	15.65	0.00	2.518	7.66	2.08	3.0	97.0	0.0	1.36	0.93	0.69	0.87	2.56	9032	1160	2	0	0	0	0	logfile
✔	7S9E	24934	2024-11-16	2021-09-20	3.7	3.21	—	3.6	0.004	0.72	0.0	0.05	13.53	0.00	2.202	11.48	0.00	7.1	92.9	0.0	-0.36	0.60	0.81	2.60	3.6	0.003	0.62	0.0	0.04	15.43	0.00	2.272	9.03	2.87	6.9	93.1	0.0	0.89	1.18	0.62	0.82	2.47	10476	1354	4	0	2	0	0	logfile
✔	7VGY	31980	2024-11-16	2021-09-20	3.1	3.36	—	3.2	0.005	0.66	0.0	0.05	14.18	0.00	2.194	10.78	0.43	6.7	93.3	0.0	-0.74	0.73	0.81	2.58	3.2	0.005	0.66	0.0	0.04	16.11	0.00	2.502	8.13	3.53	6.4	93.6	0.0	-0.34	0.91	0.74	0.85	2.53	8748	1121	6	0	2	0	0	logfile
✔	7S8V	24927	2024-11-17	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	13.87	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.05	14.24	0.00	2.094	8.62	0.85	6.6	93.4	0.0	-1.95	1.16	0.70	0.70	0.94	12502	782	7	0	12	0	6045	logfile
✔	7S9B	24931	2024-11-16	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.68	0.0	0.04	11.87	0.00	2.582	10.13	0.00	6.2	93.7	0.1	0.44	0.42	0.60	0.79	—	10458	1356	2	0	0	0	0	logfile
✔	7VH3	31985	2024-11-17	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.003	0.73	0.0	0.04	15.81	0.00	2.280	11.40	3.12	7.5	92.5	0.0	-1.28	1.66	0.70	0.73	1.21	12749	1612	1	0	0	0	0	logfile
✔	7S8U	24922	2024-11-14	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.82	0.0	0.05	16.79	0.00	2.522	14.35	4.21	9.2	90.7	0.2	-0.39	1.35	0.51	0.61	0.40	5210	667	1	0	0	0	0	logfile
✔	7S8M	24897	2024-11-15	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.005	0.62	0.0	0.04	14.98	0.00	2.476	6.03	2.40	4.8	95.2	0.0	1.11	0.30	0.82	0.83	3.93	8346	1102	6	0	0	0	0	logfile
✔	7S8o	24899	2024-11-15	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.52	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.003	0.57	0.0	0.04	15.57	0.00	2.534	2.26	2.31	4.7	95.3	0.0	1.28	0.39	0.83	0.83	3.26	8331	1101	6	0	1	0	0	logfile
✔	7S8L	24896	2024-11-15	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.41	0.00	2.389	2.13	1.94	3.2	96.8	0.0	1.28	0.33	0.84	0.84	3.82	8177	1096	6	0	0	0	0	logfile
✔	7S8P	24900	2024-11-15	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.29	0.00	2.480	1.72	3.23	5.1	94.9	0.0	0.29	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	7VGQ	31975	2024-11-17	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.11	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.003	0.72	0.0	0.04	15.32	0.00	2.391	6.84	3.49	7.7	92.3	0.1	-2.29	0.64	0.69	0.76	—	13156	1661	3	0	2	0	0	logfile
✔	7VGS	31978	2024-11-17	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.028	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	3.3	0.004	0.74	0.0	0.04	15.71	0.00	2.473	9.05	2.26	8.5	91.5	0.0	-0.71	0.64	0.67	0.79	2.72	9700	1254	6	0	0	0	0	logfile

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