Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PQQ	13596	2024-11-14	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.5	0.003	0.67	0.0	0.04	16.32	0.00	2.534	7.02	2.83	3.6	96.4	0.0	-1.45	0.51	0.44	0.75	2.41	3207	417	2	0	0	0	0	logfile
✔	7S8P	24900	2024-11-15	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.29	0.00	2.480	1.72	3.23	5.1	94.9	0.0	0.29	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	7VGR	31977	2024-11-17	2021-09-18	2.7	3.11	—	3.0	0.002	0.55	0.0	0.04	10.59	0.00	2.259	7.72	0.18	5.6	94.2	0.2	-0.41	0.65	0.76	2.17	3.0	0.004	0.72	0.0	0.04	15.22	0.00	2.503	7.46	2.68	7.4	92.6	0.0	0.17	0.73	0.67	0.82	3.12	9872	1272	6	0	0	0	0	logfile
✔	7PQE	13591	2024-11-16	2021-09-17	3.7	3.72	—	3.6	0.006	0.68	0.0	0.04	13.13	0.00	2.107	12.33	0.09	5.6	94.4	0.0	-1.09	0.81	0.82	2.85	3.7	0.003	0.60	0.0	0.04	15.26	0.00	2.319	8.03	1.75	4.2	95.8	0.0	0.62	1.09	0.80	0.81	2.30	10746	1365	5	0	2	0	0	logfile
✔	7S89	24891	2024-11-20	2021-09-17	2.54	2.40	—	2.4	0.012	1.28	4.0	0.06	16.97	0.01	2.222	5.87	1.74	2.5	97.5	0.0	-3.47	0.79	0.82	4.59	2.4	0.004	0.70	0.0	0.04	17.09	0.01	2.311	8.57	1.89	3.5	96.5	0.0	1.42	0.61	0.80	0.86	4.05	20425	2376	12	0	45	88	0	logfile
✔	7S82	24889	2024-11-15	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.003	0.74	0.0	0.04	16.53	0.00	2.465	12.66	1.10	3.8	96.2	0.0	-1.16	0.86	0.78	0.81	1.86	4904	634	4	0	0	0	0	logfile
✔	7VGG	31968	2024-11-14	2021-09-16	3.1	3.32	—	3.3	0.004	0.57	0.0	0.05	13.32	0.00	2.025	6.09	0.00	3.0	97.0	0.0	-0.81	0.76	0.82	3.77	3.3	0.003	0.57	0.0	0.05	15.67	0.00	2.123	8.89	2.97	3.3	96.7	0.0	-0.73	0.92	0.78	0.86	3.32	5274	680	2	0	0	0	0	logfile
✔	7PQ5	13587	2024-11-15	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	3.4	0.003	0.63	0.0	0.04	15.76	0.00	2.412	2.96	0.68	4.7	95.3	0.0	-0.02	1.10	0.82	0.88	4.53	8512	1047	1	0	0	0	0	logfile
✔	7VGi	31970	2024-11-16	2021-09-16	3.36	3.08	—	3.3	0.005	0.75	0.0	0.05	16.05	0.00	2.032	9.42	0.38	10.5	89.3	0.2	-4.39	0.68	0.83	3.20	3.3	0.003	0.66	0.0	0.04	16.48	0.00	1.999	5.64	1.37	9.4	90.6	0.0	-2.32	0.38	0.68	0.84	2.36	12174	1493	6	0	8	0	0	logfile
✔	7VGF	31967	2024-11-15	2021-09-16	3.3	3.62	—	3.5	0.004	0.70	0.0	0.04	14.50	0.00	2.083	9.67	0.24	3.3	96.7	0.0	2.62	0.63	0.74	1.47	3.5	0.003	0.54	0.0	0.04	15.61	0.00	2.003	6.20	3.22	2.7	97.3	0.0	2.83	0.49	0.69	0.80	1.51	8280	1100	4	0	4	0	0	logfile
✔	7VGJ	31971	2024-11-16	2021-09-16	3.98	3.67	—	3.5	0.007	0.92	0.0	0.05	16.17	0.01	2.160	26.07	0.48	16.4	83.6	0.0	-3.55	0.62	0.78	2.06	3.5	0.003	0.77	0.0	0.04	17.10	0.00	2.527	12.14	1.85	10.2	89.8	0.0	-1.69	0.49	0.61	0.77	1.49	11460	1414	3	0	1	0	0	logfile
✔	7VGH	31969	2024-11-17	2021-09-16	3.39	3.14	—	3.3	0.005	0.75	0.0	0.05	17.58	0.00	1.989	9.00	0.23	12.4	87.6	0.0	-2.72	0.67	0.84	2.72	3.3	0.006	0.70	0.0	0.05	16.99	0.00	1.972	5.76	1.83	12.2	87.8	0.0	-2.07	1.12	0.67	0.86	2.34	12404	1521	7	0	14	0	0	logfile
✔	7S7C	24883	2024-11-17	2021-09-15	3.62	3.53	—	3.6	0.003	0.49	0.0	0.04	13.47	0.00	2.019	8.97	1.10	8.3	91.7	0.0	-0.49	0.72	0.73	2.17	3.6	0.003	0.60	0.0	0.04	16.88	0.00	2.517	7.25	2.95	5.8	94.2	0.0	-0.11	0.63	0.75	0.75	1.56	13850	1629	8	37	1	0	0	logfile
✔	7PPJ	13581	2024-11-14	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.8	0.003	0.69	0.0	0.05	15.77	0.00	2.543	10.40	1.37	4.6	95.4	0.0	-0.19	0.60	0.71	0.77	1.83	5175	643	2	0	1	0	0	logfile
✔	7VFX	31962	2024-11-15	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	15.03	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.003	0.58	0.0	0.04	15.51	0.00	2.493	4.55	1.03	2.4	97.6	0.0	1.11	1.25	0.71	0.89	3.81	9004	1139	7	0	4	0	0	logfile
✔	7VG3	31964	2024-11-15	2021-09-14	3.73	3.86	—	3.8	0.006	1.15	2.0	0.06	16.12	0.01	1.935	7.51	5.13	10.8	88.7	0.6	-4.51	0.80	0.84	3.10	3.8	0.003	0.72	0.0	0.04	17.40	0.00	2.308	7.90	3.03	9.5	90.5	0.0	-1.72	1.04	0.80	0.85	1.88	8118	860	4	62	3	0	0	logfile
✔	7VG2	31963	2024-11-15	2021-09-14	3.1	2.73	—	3.0	0.016	1.43	1.0	0.09	16.55	0.01	1.822	17.56	1.74	8.0	91.8	0.2	-3.84	0.72	0.79	3.83	3.0	0.003	0.66	0.0	0.04	17.61	0.00	2.181	12.90	5.07	5.5	94.5	0.0	0.10	0.51	0.71	0.79	2.54	8203	845	4	71	3	0	0	logfile
✔	7VFi	31955	2024-11-15	2021-09-13	3.98	5.00	—	4.6	0.008	1.01	0.0	0.05	15.62	0.01	2.216	10.24	0.21	6.6	93.4	0.0	-2.75	0.71	0.85	0.84	4.6	0.003	0.73	0.0	0.04	16.57	0.00	2.500	11.30	2.33	4.2	95.8	0.0	0.64	1.29	0.71	0.84	0.69	8903	1149	5	0	3	0	0	logfile
✔	7VFE	31950	2024-11-17	2021-09-13	2.63	2.74	2.54	2.7	0.008	0.58	0.0	0.05	13.52	0.00	2.285	2.98	3.08	3.8	96.2	0.0	-0.79	0.84	0.89	5.29	2.7	0.004	0.58	0.0	0.05	15.94	0.00	2.227	3.22	2.05	2.4	97.6	0.0	0.41	1.13	0.82	0.90	5.04	12630	1587	3	0	0	0	0	logfile
✔	7VFP	31957	2024-11-15	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.16	0.00	2.012	14.33	0.00	5.0	94.9	0.1	0.33	0.57	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile

• ← previous
• Page 276 of 424
• next →