Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VFP	31957	2024-11-15	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.004	0.79	0.0	0.05	14.16	0.00	2.012	14.33	0.00	5.0	94.9	0.1	0.33	0.57	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	7VFF	31951	2024-11-17	2021-09-13	4.1	3.76	3.90	4.0	0.007	0.72	0.0	0.05	13.87	0.00	2.334	2.40	0.41	3.6	96.4	0.0	-0.82	0.79	0.82	—	3.9	0.003	0.59	0.0	0.05	13.94	0.00	2.534	4.04	0.00	2.6	97.3	0.1	0.18	1.45	0.77	0.84	—	12579	1581	3	0	0	0	0	logfile
✔	7VFD	31949	2024-11-17	2021-09-13	2.25	2.33	2.21	2.3	0.004	0.53	0.0	0.05	12.47	0.00	2.204	3.62	0.60	3.7	96.3	0.0	-0.65	0.81	0.88	6.01	2.3	0.002	0.51	0.0	0.05	15.17	0.00	2.500	2.76	0.73	1.9	98.1	0.0	0.41	1.13	0.80	0.89	5.51	13262	1623	6	0	0	350	0	logfile
✔	7S62	24847	2024-11-16	2021-09-12	3.65	3.86	3.61	3.8	0.005	0.72	0.0	0.05	19.02	0.01	1.694	11.28	0.08	8.9	91.0	0.1	-1.38	0.66	0.78	1.97	3.8	0.003	0.68	0.0	0.05	16.82	0.01	2.353	8.85	3.46	7.9	91.9	0.2	-1.14	0.35	0.66	0.77	1.32	11013	1382	2	0	17	0	0	logfile
✔	7S5V	24840	2024-11-16	2021-09-12	3.3	3.61	—	3.5	0.006	0.88	0.0	0.05	15.54	0.01	2.093	5.38	4.27	5.1	94.9	0.0	-4.70	0.72	0.85	2.01	3.5	0.004	0.62	0.0	0.04	16.24	0.00	1.973	7.32	2.65	3.7	96.3	0.0	0.13	0.41	0.68	0.85	1.32	10964	1397	2	0	4	0	0	logfile
✔	7S5Z	24844	2024-11-20	2021-09-12	3.9	4.28	—	4.1	0.005	0.96	0.0	0.06	16.84	0.01	2.031	6.17	6.47	4.9	95.1	0.0	-3.30	0.67	0.83	0.76	4.1	0.003	0.73	0.0	0.04	17.31	0.00	2.007	11.44	3.04	4.1	95.9	0.0	0.16	0.74	0.68	0.84	0.68	21148	2687	6	0	4	0	0	logfile
✔	7S61	24846	2024-11-20	2021-09-12	4.0	4.41	—	4.1	0.010	1.58	1.0	0.08	17.70	0.01	2.013	4.35	8.22	4.6	95.3	0.1	-4.86	0.65	0.81	—	4.1	0.005	0.84	0.0	0.05	16.87	0.00	1.892	14.95	3.39	4.4	95.6	0.0	0.61	0.81	0.66	0.83	—	20985	2676	6	0	4	0	0	logfile
✔	7S5T	24839	2024-11-16	2021-09-12	3.1	3.47	—	3.4	0.005	0.68	0.0	0.05	15.46	0.00	2.033	5.67	4.68	2.5	97.5	0.0	-2.41	0.60	0.86	2.49	3.4	0.003	0.51	0.0	0.04	15.71	0.00	2.456	6.07	2.97	1.5	98.5	0.0	0.80	1.91	0.63	0.88	2.16	10078	1284	5	0	2	0	0	logfile
✔	7S5Y	24843	2024-11-20	2021-09-12	3.9	4.28	—	4.1	0.010	1.48	4.0	0.08	17.70	0.01	2.032	5.99	7.41	5.3	94.7	0.1	-5.12	0.64	0.81	0.64	4.1	0.003	0.80	0.0	0.04	17.10	0.00	1.942	11.52	2.66	4.2	95.8	0.0	0.13	2.00	0.65	0.83	0.60	21106	2686	6	0	4	0	0	logfile
✔	7VF2	31946	2024-11-17	2021-09-10	3.0	3.55	—	3.4	0.004	0.73	0.0	0.04	15.88	0.00	2.095	9.72	0.26	3.7	96.3	0.0	-2.72	0.77	0.84	1.85	3.4	0.003	0.66	0.0	0.04	17.94	0.00	2.430	8.11	1.42	3.1	96.9	0.0	1.40	0.59	0.75	0.84	1.05	13565	1716	4	0	0	0	0	logfile
✔	7S4U	24833	2024-11-16	2021-09-09	3.56	3.78	—	3.6	0.004	0.74	0.0	0.04	19.56	0.00	2.090	4.36	0.00	3.3	96.7	0.0	-1.09	0.78	0.75	2.48	3.6	0.002	0.59	0.0	0.04	19.84	0.00	2.527	3.87	0.61	3.7	96.3	0.0	-0.29	0.51	0.78	0.75	1.78	11927	1092	4	142	0	0	0	logfile
✔	7S4X	24838	2024-11-17	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	19.28	0.00	1.878	7.05	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.003	0.53	0.0	0.04	19.54	0.00	1.951	5.49	0.82	2.9	97.1	0.0	0.97	0.29	0.83	0.88	3.69	14491	1354	10	161	5	7	0	logfile
✔	7VDM	31923	2024-11-15	2021-09-07	2.98	2.90	—	3.0	0.008	1.29	0.0	0.07	13.65	0.01	2.261	4.17	0.22	4.5	95.5	0.0	-2.74	0.66	0.77	3.13	3.0	0.004	0.98	1.0	0.05	16.30	0.00	2.103	8.10	1.61	2.9	97.1	0.0	0.54	1.54	0.66	0.79	2.57	8563	1096	7	0	1	0	0	logfile
✔	7VDL	31922	2024-11-15	2021-09-07	3.22	3.02	—	3.0	0.008	1.16	1.0	0.07	13.81	0.01	1.743	8.31	0.11	4.9	95.1	0.0	-1.82	0.66	0.78	2.75	3.1	0.003	0.71	0.0	0.04	16.14	0.00	2.535	9.47	2.35	3.9	96.1	0.0	0.48	0.45	0.66	0.80	2.40	8598	1100	7	0	1	0	0	logfile
✔	7VDT	31925	2024-11-18	2021-09-07	2.8	3.17	—	2.9	0.007	0.70	0.0	0.04	23.62	0.00	1.303	12.86	0.34	4.7	95.2	0.1	-0.92	0.86	0.86	3.23	3.0	0.003	0.64	0.0	0.04	24.98	0.00	2.119	7.60	1.95	4.9	95.1	0.0	1.22	0.46	0.86	0.87	2.50	16704	1384	12	272	3	0	0	logfile
✔	7S3i	24825	2024-11-15	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.55	0.0	0.04	16.22	0.00	2.522	4.11	1.50	2.0	98.0	0.0	1.59	0.93	0.77	0.88	3.76	8094	1023	5	0	0	0	0	logfile
✔	7VDH	31918	2024-11-15	2021-09-07	2.9	3.12	—	3.0	0.011	1.39	0.0	0.08	13.91	0.01	2.232	4.34	0.00	2.8	97.2	0.0	-2.38	0.75	0.83	3.85	3.0	0.004	0.73	0.0	0.04	16.06	0.00	2.525	6.42	1.80	2.4	97.6	0.0	0.73	1.16	0.76	0.85	2.92	8710	1109	6	0	2	0	0	logfile
✔	7VDC	31913	2024-11-16	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.002	0.55	0.0	0.04	16.46	0.00	2.618	8.74	1.17	3.0	97.0	0.0	0.64	0.35	0.63	0.75	0.90	10472	1372	4	0	0	0	0	logfile
✔	7VD9	31911	2024-11-18	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile
✔	7PNB	13546	2024-11-18	2021-09-06	3.46	2.29	—	2.2	0.013	1.75	18.0	0.12	18.90	0.03	1.317	8.70	2.56	5.5	94.5	0.0	0.09	0.77	0.84	4.32	2.1	0.004	0.82	0.0	0.05	14.10	0.00	2.420	7.31	3.42	3.4	96.6	0.0	0.09	0.53	0.74	0.79	3.81	15714	1647	54	0	252	0	0	logfile

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