Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VD9	31911	2024-11-18	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile
✔	7PN1	13545	2024-11-16	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.003	0.56	0.0	0.04	14.72	0.00	2.383	4.72	0.89	2.8	97.2	0.0	1.41	0.99	0.60	0.80	0.81	10384	657	1	0	0	0	5237	logfile
✔	7PMX	13543	2024-11-16	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.004	0.59	0.0	0.04	12.94	0.00	2.299	5.09	1.77	4.3	95.7	0.0	0.87	0.98	0.61	0.80	1.66	10417	659	2	0	0	0	5253	logfile
✔	7PMW	13542	2024-11-16	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.003	0.55	0.0	0.04	11.65	0.00	2.300	6.80	0.18	3.8	96.2	0.0	0.68	1.20	0.58	0.75	—	10153	643	2	0	0	0	5123	logfile
✔	7S1Z	24813	2024-11-14	2021-09-02	3.3	3.78	—	3.9	0.003	0.70	0.0	0.04	12.33	0.01	2.245	12.11	0.18	9.4	90.6	0.0	-0.47	0.30	0.50	0.99	3.9	0.003	0.61	0.0	0.04	14.64	0.00	2.592	9.04	1.60	8.2	91.8	0.0	0.06	1.15	0.49	0.70	1.63	6416	944	2	0	0	0	0	logfile
✔	7S1Y	24812	2024-11-14	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.004	0.78	2.0	0.05	15.13	0.00	2.581	14.24	3.65	7.9	91.8	0.2	-0.64	0.57	0.52	0.66	0.69	6580	948	4	0	6	0	0	logfile
✔	7PMF	13531	2024-11-16	2021-09-02	3.4	4.29	3.46	3.3	0.010	1.00	1.0	0.06	15.34	0.01	1.731	3.78	0.09	0.2	99.8	0.0	-1.44	0.91	0.83	3.07	3.3	0.002	0.63	0.0	0.04	15.35	0.00	1.997	4.58	0.28	1.5	98.5	0.0	2.05	1.28	0.94	0.88	2.30	10125	1256	7	0	6	0	0	logfile
✔	7PMJ	13536	2024-11-16	2021-09-02	3.4	4.31	3.37	3.3	0.010	1.11	1.0	0.06	15.90	0.01	1.729	6.69	0.09	0.2	99.8	0.0	-1.97	0.90	0.82	3.01	3.3	0.002	0.61	0.0	0.04	15.86	0.00	1.984	5.39	0.65	1.5	98.5	0.0	1.75	0.75	0.93	0.86	2.75	10085	1251	7	0	6	0	0	logfile
✔	7PMi	13535	2024-11-16	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.17	2.0	0.07	15.80	0.01	1.733	5.04	0.09	0.2	99.8	0.0	-1.50	0.92	0.84	2.97	3.3	0.004	0.68	0.0	0.04	15.60	0.00	1.968	5.88	0.28	1.1	98.9	0.0	1.69	0.66	0.94	0.88	2.57	10189	1264	7	0	6	0	0	logfile
✔	7PML	13538	2024-11-16	2021-09-02	3.3	4.18	3.26	3.2	0.005	0.86	1.0	0.05	15.93	0.01	1.641	3.95	0.09	0.2	99.8	0.0	-1.35	0.91	0.83	2.88	3.3	0.002	0.64	0.0	0.04	16.04	0.00	2.026	4.99	0.55	1.4	98.6	0.0	2.16	0.72	0.93	0.87	2.33	10189	1264	7	0	6	0	0	logfile
✔	7PMH	13533	2024-11-16	2021-09-02	3.4	4.28	3.26	3.3	0.009	1.00	2.0	0.06	15.50	0.01	1.732	4.17	0.09	0.2	99.8	0.0	-1.51	0.91	0.83	3.35	3.3	0.003	0.64	0.0	0.04	15.85	0.00	1.979	5.35	0.37	2.3	97.7	0.0	1.96	0.62	0.94	0.88	2.65	10154	1259	7	0	6	0	0	logfile
✔	7S1X	24807	2024-11-17	2021-09-02	2.9	3.15	—	3.3	0.005	0.83	2.0	0.05	12.05	0.01	2.029	18.39	0.17	9.9	90.1	0.0	-0.65	0.51	0.72	3.89	3.2	0.003	0.66	2.0	0.04	15.15	0.00	2.462	9.56	3.80	8.0	92.0	0.0	0.17	0.49	0.61	0.81	3.25	12658	1742	4	0	6	0	0	logfile
✔	7PM5	13521	2024-11-16	2021-09-02	3.1	3.88	3.10	3.5	0.005	0.83	1.0	0.05	14.89	0.01	1.732	4.50	0.09	0.3	99.7	0.0	-1.20	0.89	0.86	3.36	3.5	0.003	0.64	0.0	0.04	15.13	0.00	1.954	5.10	0.74	1.9	98.1	0.0	1.93	0.68	0.87	0.85	3.03	10171	1263	7	0	5	0	0	logfile
✔	7S1M	24805	2024-11-15	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.004	0.56	0.0	0.04	15.93	0.00	2.479	3.45	1.36	1.8	98.2	0.0	1.54	0.91	0.77	0.87	3.84	9160	1168	7	0	1	0	0	logfile
✔	7PMG	13532	2024-11-16	2021-09-02	3.3	4.20	3.27	3.2	0.014	1.18	2.0	0.07	15.70	0.01	1.727	4.64	0.09	0.2	99.8	0.0	-1.37	0.92	0.85	3.45	3.3	0.003	0.65	0.0	0.04	15.63	0.00	1.974	4.89	0.37	1.5	98.5	0.0	1.79	1.67	0.94	0.89	2.77	10189	1264	7	0	6	0	0	logfile
✔	7PMC	13528	2024-11-16	2021-09-02	3.7	4.09	3.62	3.5	0.008	1.07	1.0	0.06	16.22	0.01	1.732	7.05	0.09	0.2	99.8	0.0	-1.41	0.89	0.80	2.38	3.5	0.004	0.72	0.0	0.04	16.33	0.00	1.906	8.44	2.04	2.1	97.9	0.0	1.31	1.33	0.90	0.82	1.93	10139	1258	7	0	5	0	0	logfile
✔	7PM8	13524	2024-11-16	2021-09-02	3.5	3.91	3.50	3.4	0.004	0.88	1.0	0.05	15.71	0.01	1.732	6.40	0.09	0.3	99.7	0.0	-1.60	0.90	0.83	2.90	3.4	0.003	0.70	0.0	0.04	16.08	0.00	2.001	7.19	0.74	1.7	98.3	0.0	1.42	1.31	0.90	0.85	2.55	10149	1260	7	0	5	0	0	logfile
✔	7PMA	13526	2024-11-16	2021-09-02	3.6	4.07	3.61	3.5	0.004	0.88	1.0	0.05	15.93	0.01	1.732	6.45	0.09	0.2	99.8	0.0	-1.07	0.90	0.82	2.92	3.5	0.003	0.72	0.0	0.04	15.65	0.00	2.015	7.10	0.84	1.9	98.1	0.0	1.79	1.30	0.91	0.84	2.44	10066	1249	7	0	5	0	0	logfile
✔	7PLV	13503	2024-11-16	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	15.02	0.01	1.732	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.002	0.67	0.0	0.04	15.88	0.00	2.070	6.05	0.55	0.9	99.1	0.0	1.72	0.72	0.91	0.85	2.40	10139	1263	6	0	3	0	0	logfile
✔	7PLS	13499	2024-11-17	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.35	0.00	2.039	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.53	0.0	0.04	16.24	0.00	2.590	3.75	0.67	5.4	94.6	0.0	0.44	0.95	0.76	0.88	5.18	14224	1724	12	0	4	52	0	logfile

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