Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PLT	13501	2024-11-16	2021-09-01	3.3	3.94	3.24	3.4	0.014	1.15	1.0	0.07	14.64	0.01	1.727	4.16	0.00	0.2	99.8	0.0	-1.61	0.92	0.87	3.10	3.5	0.002	0.67	0.0	0.04	15.67	0.00	2.089	5.90	1.39	1.1	98.9	0.0	1.67	0.63	0.90	0.87	2.21	10148	1264	6	0	3	0	0	logfile
✔	7PLX	13505	2024-11-16	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	1.0	0.05	14.95	0.01	1.731	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.004	0.72	0.0	0.04	15.78	0.00	1.938	8.43	1.57	1.6	98.4	0.0	1.41	1.31	0.92	0.85	2.87	10139	1263	6	0	3	0	0	logfile
✔	7PLV	13503	2024-11-16	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	15.02	0.01	1.732	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.002	0.67	0.0	0.04	15.88	0.00	2.070	6.05	0.55	0.9	99.1	0.0	1.72	0.72	0.91	0.85	2.40	10139	1263	6	0	3	0	0	logfile
✔	7VBY	31885	2024-11-15	2021-09-01	2.54	3.43	—	3.1	0.007	0.85	2.0	0.08	16.97	0.00	2.120	17.97	0.75	2.3	97.5	0.2	1.56	0.64	0.77	4.64	3.1	0.004	0.81	0.0	0.04	17.68	0.00	2.377	7.05	2.36	2.9	97.1	0.0	2.18	1.33	0.65	0.88	4.13	8207	951	19	0	23	0	0	logfile
✔	7PLS	13499	2024-11-17	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.35	0.00	2.039	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.53	0.0	0.04	16.24	0.00	2.590	3.75	0.67	5.4	94.6	0.0	0.44	0.95	0.76	0.88	5.18	14224	1724	12	0	4	52	0	logfile
✔	7VBM	31882	2024-11-16	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.69	0.00	2.526	5.83	1.07	1.7	98.3	0.0	2.83	0.28	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7PLH	13489	2024-11-18	2021-08-31	3.57	3.84	—	3.8	0.011	1.67	14.0	0.10	22.70	0.01	1.901	13.37	8.98	1.9	98.1	0.0	-2.29	0.48	0.77	1.50	3.7	0.003	0.69	0.0	0.04	20.02	0.00	1.969	9.83	2.53	2.4	97.6	0.0	0.31	3.44	0.48	0.84	1.35	15542	1820	16	44	14	0	0	logfile
✔	7VBH	31879	2024-11-15	2021-08-31	3.0	3.20	—	3.2	0.010	1.12	1.0	0.06	15.92	0.01	1.784	12.22	0.52	4.7	95.3	0.0	-4.06	0.61	0.66	1.58	3.2	0.004	0.68	0.0	0.04	17.41	0.00	2.451	7.33	2.99	4.6	95.4	0.0	0.11	2.12	0.68	0.81	2.50	9116	1141	7	0	1	0	0	logfile
✔	7S0T	24793	2024-11-18	2021-08-31	3.05	3.49	—	3.2	0.006	0.72	0.0	0.76	13.86	0.00	2.181	6.29	0.00	6.1	93.9	0.0	0.29	0.86	0.81	2.64	3.2	0.008	1.35	0.0	0.24	15.38	0.00	2.158	6.68	2.23	8.3	91.6	0.0	0.03	0.38	0.87	0.85	2.84	17095	2179	13	24	3	31	0	logfile
✔	7VBi	31880	2024-11-15	2021-08-31	3.0	3.19	—	3.2	0.011	1.13	0.0	0.06	14.91	0.01	2.181	4.22	0.81	5.6	94.4	0.0	-3.46	0.66	0.80	3.10	3.2	0.003	0.63	0.0	0.04	17.07	0.00	2.548	4.83	2.95	4.4	95.6	0.0	0.03	1.19	0.66	0.80	2.01	9223	1158	6	0	0	0	0	logfile
✔	7PLM	13493	2024-11-19	2021-08-31	2.9	2.35	—	2.7	0.006	0.70	0.0	0.05	14.62	0.01	1.802	14.13	4.98	4.5	95.5	0.0	-0.88	0.61	0.76	3.71	2.7	0.004	0.62	0.0	0.04	16.28	0.00	1.857	11.07	1.48	3.2	96.8	0.0	-0.16	0.98	0.60	0.76	3.05	18225	2354	6	0	12	114	0	logfile
✔	7PLA	13486	2024-11-15	2021-08-30	3.04	4.14	—	3.1	0.008	1.08	0.0	0.09	26.24	0.00	2.216	9.66	0.26	3.3	96.7	0.0	-0.03	0.74	0.61	1.97	3.1	0.007	0.71	0.0	0.04	24.65	0.00	2.345	15.57	2.59	4.0	96.0	0.0	0.45	0.87	0.84	0.81	1.67	8701	437	4	244	0	0	0	logfile
✔	7S0E	24788	2024-11-15	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.76	0.0	0.05	13.07	0.00	2.383	13.28	0.00	8.3	91.5	0.2	-1.71	1.45	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7S0Q	24791	2024-11-18	2021-08-30	3.7	4.24	—	3.8	0.004	0.61	0.0	0.06	16.05	0.00	1.926	10.03	0.00	9.9	90.1	0.0	-4.98	0.82	0.71	0.74	3.8	0.003	0.62	0.0	0.04	13.42	0.00	2.077	7.20	0.82	10.5	89.5	0.0	-3.12	0.79	0.82	0.72	0.98	15357	958	8	0	16	0	7466	logfile
✔	7S0F	24789	2024-11-17	2021-08-30	2.96	3.06	—	3.0	0.003	0.45	0.0	0.04	13.98	0.00	1.994	3.24	1.74	2.6	97.3	0.1	-1.72	0.49	0.74	2.57	3.0	0.004	0.54	0.0	0.04	16.52	0.00	2.280	3.74	3.07	3.3	96.6	0.1	0.77	1.30	0.51	0.78	2.32	13885	892	5	0	1	0	6887	logfile
✔	7S0G	24790	2024-11-17	2021-08-30	3.86	3.93	—	3.9	0.003	0.44	0.0	0.04	12.41	0.00	1.898	3.75	0.00	3.3	96.7	0.0	-1.90	0.49	0.72	2.15	3.9	0.003	0.54	0.0	0.04	15.60	0.00	2.151	8.51	2.43	4.3	95.7	0.0	0.31	1.31	0.49	0.72	2.04	13846	893	5	0	1	0	6854	logfile
✔	7S06	24785	2024-11-15	2021-08-30	3.3	3.59	3.40	3.6	0.004	0.66	0.0	0.05	16.63	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.66	0.0	0.05	16.56	0.00	2.410	5.94	2.89	6.3	93.7	0.0	1.08	1.05	0.69	0.82	2.31	7862	918	8	0	14	0	0	logfile
✔	7S05	24784	2024-11-14	2021-08-30	3.1	3.37	3.11	3.4	0.004	0.68	0.0	0.05	16.05	0.00	2.212	8.45	0.00	5.8	94.2	0.0	0.10	0.68	0.81	2.22	3.4	0.004	0.65	0.0	0.05	15.83	0.00	2.482	7.10	1.46	6.1	93.9	0.0	0.90	0.50	0.72	0.86	2.61	7504	874	8	0	16	0	0	logfile
✔	7VAG	31840	2024-11-14	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.003	0.78	0.0	0.05	16.17	0.00	2.517	10.84	3.25	8.0	92.0	0.0	0.03	1.35	0.56	0.77	1.99	5697	743	3	0	0	0	0	logfile
✔	7VAD	31837	2024-11-14	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.004	0.80	0.0	0.04	16.22	0.00	2.470	11.36	6.50	7.9	92.1	0.0	0.28	0.74	0.62	0.81	2.11	5697	743	3	0	0	0	0	logfile

• ← previous
• Page 279 of 424
• next →