Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VAD	31837	2024-11-14	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.004	0.80	0.0	0.04	16.22	0.00	2.470	11.36	6.50	7.9	92.1	0.0	0.28	0.74	0.62	0.81	2.11	5697	743	3	0	0	0	0	logfile
✔	7VAE	31838	2024-11-14	2021-08-29	3.55	4.03	—	4.0	0.003	0.67	0.0	0.04	13.73	0.01	2.212	11.73	0.00	7.5	92.5	0.0	-0.15	0.62	0.76	2.31	4.0	0.004	0.82	0.0	0.05	16.52	0.00	2.523	12.62	4.84	7.5	92.5	0.0	-0.08	0.69	0.58	0.77	1.93	5643	736	3	0	0	0	0	logfile
✔	7RZY	24783	2024-11-18	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	15.46	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.84	0.0	0.04	17.77	0.01	2.199	11.70	1.96	7.7	91.7	0.6	-0.91	1.32	0.70	0.66	0.70	17458	2177	13	0	7	0	0	logfile
✔	7VAB	31836	2024-11-15	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	9.19	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.003	0.56	0.0	0.04	14.43	0.00	2.478	4.67	2.49	2.7	97.3	0.0	1.00	1.32	0.69	0.82	2.51	8772	1077	7	0	6	0	0	logfile
✔	7RZG	24759	2024-11-18	2021-08-27	4.1	3.50	—	3.7	0.007	1.17	0.0	0.06	12.78	0.01	2.077	19.55	0.18	6.1	93.9	0.0	-3.80	0.62	0.67	—	3.4	0.004	0.78	0.0	0.05	13.92	0.00	2.309	10.92	0.00	6.7	93.3	0.0	-0.78	1.27	0.63	0.69	—	15385	1888	2	0	0	0	0	logfile
✔	7RZ8	24754	2024-11-18	2021-08-27	4.1	3.82	—	4.0	0.010	1.29	0.0	0.06	17.56	0.01	2.246	5.13	0.93	4.1	95.8	0.1	-4.14	0.66	0.74	—	3.7	0.003	0.73	0.0	0.04	15.60	0.00	2.446	11.33	0.00	3.9	96.1	0.0	0.40	0.94	0.67	0.77	—	16722	2044	8	0	26	0	0	logfile
✔	7V9X	31829	2024-11-16	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.003	0.59	0.0	0.04	24.32	0.00	2.524	5.15	1.76	3.2	96.8	0.0	0.59	0.88	0.72	0.85	2.63	10550	760	9	210	0	0	0	logfile
✔	7RZQ	24774	2024-11-13	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	7RZR	24775	2024-11-13	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	7RZT	24777	2024-11-13	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7RZE	24757	2024-11-18	2021-08-27	3.3	3.26	—	3.4	0.005	0.97	0.0	0.06	13.09	0.01	2.098	10.04	0.30	3.9	96.1	0.0	-3.81	0.64	0.77	2.14	3.3	0.003	0.67	0.0	0.04	16.41	0.00	2.498	5.94	2.60	4.2	95.8	0.0	0.01	0.64	0.65	0.81	2.38	15545	1898	4	0	0	0	0	logfile
✔	7RZF	24758	2024-11-18	2021-08-27	3.4	2.25	—	3.5	0.009	1.19	1.0	0.07	12.93	0.01	1.454	14.43	0.41	4.2	95.8	0.0	-4.07	0.65	0.74	2.52	3.5	0.003	0.70	0.0	0.04	15.81	0.00	2.505	8.79	2.59	3.8	96.2	0.0	-0.72	2.51	0.66	0.77	1.58	15584	1902	4	0	0	0	0	logfile
✔	7RZS	24776	2024-11-13	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	7RZ5	24751	2024-11-18	2021-08-27	3.3	3.18	—	3.4	0.010	1.19	0.0	0.05	15.37	0.01	2.368	1.91	0.35	3.5	96.5	0.0	-5.41	0.72	0.83	3.34	3.3	0.003	0.57	0.0	0.04	15.78	0.00	2.445	4.09	1.62	2.0	98.0	0.0	1.10	0.62	0.75	0.87	3.06	16770	2046	8	0	28	0	0	logfile
✔	7RZV	24779	2024-11-14	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZU	24778	2024-11-13	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	7RZH	24760	2024-11-18	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.004	0.79	0.0	0.04	16.56	0.00	2.394	17.55	3.48	3.8	96.1	0.1	-0.28	3.17	0.72	0.64	0.46	15300	1867	2	0	0	0	0	logfile
✔	7V9L	31824	2024-11-15	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.61	0.0	0.04	15.66	0.00	2.509	8.32	1.26	1.8	98.2	0.0	0.92	0.47	0.77	0.79	2.74	8047	1019	5	0	0	0	0	logfile
✔	7V9M	31825	2024-11-15	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.52	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.64	0.0	0.04	15.56	0.00	2.458	8.23	2.39	3.2	96.8	0.0	0.73	1.17	0.73	0.75	2.05	8138	1029	6	0	0	0	0	logfile
✔	7RYY	24748	2024-11-18	2021-08-26	4.4	3.68	—	7.0	0.005	1.01	0.0	0.05	11.50	0.01	2.230	5.96	0.59	3.6	96.4	0.0	-4.08	0.63	0.51	—	3.5	0.003	0.76	0.0	0.04	12.71	0.00	2.391	14.31	0.06	3.7	96.3	0.0	0.20	1.81	0.72	0.73	—	15836	2024	8	0	2	0	0	logfile

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