Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYR	24746	2024-11-19	2021-08-26	3.6	3.52	—	3.6	0.007	1.13	4.0	0.06	19.14	0.01	2.197	7.18	0.60	7.0	93.0	0.0	-1.65	0.76	0.81	1.67	3.6	0.004	0.73	0.0	0.04	17.15	0.01	2.501	6.69	4.50	4.8	95.2	0.0	0.24	0.56	0.77	0.82	1.31	13024	1556	8	0	32	0	0	logfile
✔	7PKP	13476	2024-11-19	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.49	0.0	0.04	15.95	0.00	2.527	5.77	3.48	4.1	95.9	0.0	-0.78	1.16	0.71	0.82	2.07	20360	2504	8	0	0	0	0	logfile
✔	7RYS	24747	2024-11-19	2021-08-26	3.7	3.49	—	3.6	0.007	1.12	0.0	0.06	18.24	0.01	2.247	6.73	0.30	5.7	94.3	0.0	-1.42	0.68	0.70	1.94	3.6	0.003	0.70	0.0	0.04	16.55	0.00	2.512	6.13	1.50	4.5	95.5	0.0	0.23	0.55	0.68	0.70	2.38	12900	1556	8	0	32	0	0	logfile
✔	7V9L	31824	2024-11-15	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.61	0.0	0.04	15.66	0.00	2.509	8.32	1.26	1.8	98.2	0.0	0.92	0.47	0.77	0.79	2.74	8047	1019	5	0	0	0	0	logfile
✔	7PKo	13474	2024-11-19	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.62	0.0	0.04	16.27	0.00	2.219	8.31	3.08	4.3	95.7	0.0	-0.53	0.61	0.75	0.81	2.33	20368	2504	8	0	0	0	0	logfile
✔	7RYZ	24749	2024-11-18	2021-08-26	4.15	3.50	—	3.4	0.008	0.98	0.0	0.05	11.66	0.01	2.225	4.30	0.24	3.4	96.6	0.0	-4.55	0.73	0.77	—	3.4	0.003	0.66	0.0	0.04	13.02	0.00	2.450	9.77	0.00	3.2	96.8	0.0	0.65	2.05	0.74	0.78	—	15742	2014	8	0	4	0	0	logfile
✔	7RYP	24744	2024-11-16	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.5	0.004	0.69	0.0	0.04	13.04	0.00	2.173	11.03	0.00	11.0	88.7	0.3	-1.33	1.38	0.78	0.73	—	11293	725	2	0	0	0	5599	logfile
✔	7RYE	24735	2024-11-19	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.003	0.71	0.0	0.04	17.95	0.00	2.435	13.23	3.94	3.9	96.1	0.0	1.35	1.10	0.81	0.81	0.26	19708	2535	24	0	0	0	0	logfile
✔	7PKB	13467	2024-11-18	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.1	0.003	0.70	0.0	0.14	13.44	0.00	2.133	1.98	0.11	3.6	96.4	0.0	-0.44	0.57	0.73	0.87	4.76	16145	1030	15	0	10	5	7970	logfile
✔	7RYQ	24745	2024-11-14	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.05	14.03	0.01	2.393	13.97	0.00	5.8	94.2	0.0	0.03	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	7PKG	13471	2024-11-18	2021-08-25	3.3	2.97	3.19	3.2	0.005	0.85	0.0	0.17	13.68	0.01	2.156	4.65	0.00	5.5	94.5	0.0	-1.10	0.69	0.84	5.60	3.2	0.003	0.76	0.0	0.17	14.39	0.00	2.218	2.91	0.33	3.4	96.6	0.0	-0.73	0.57	0.70	0.86	4.78	16155	1030	15	0	10	5	7980	logfile
✔	7V90	31806	2024-11-16	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.09	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.52	0.0	0.03	27.15	0.00	2.381	6.36	0.77	2.9	97.1	0.0	2.66	1.11	0.72	0.83	2.18	12148	781	10	290	0	0	0	logfile
✔	7V99	31811	2024-11-17	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	20.83	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.61	0.0	0.03	21.08	0.00	2.463	10.72	2.01	5.2	94.7	0.1	-0.26	1.36	0.82	0.75	0.62	14582	1170	5	249	0	0	0	logfile
✔	7V9A	31813	2024-11-18	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	18.98	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.69	0.0	0.04	20.38	0.00	2.513	10.89	2.72	7.6	92.4	0.0	-2.11	1.87	0.72	0.68	1.24	16876	1723	10	146	0	0	0	logfile
✔	7RYC	24733	2024-11-15	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.004	0.65	0.0	0.04	15.82	0.00	2.300	2.49	1.75	2.8	97.2	0.0	-0.39	0.44	0.82	0.81	2.52	8277	1125	7	0	2	0	0	logfile
✔	7V8M	31804	2024-11-15	2021-08-23	4.2	4.31	—	4.2	0.004	0.81	0.0	0.05	13.86	0.01	2.046	15.98	0.10	4.1	95.9	0.0	-0.28	0.67	0.72	—	4.2	0.003	0.76	0.0	0.05	14.01	0.00	2.367	11.55	0.00	4.9	95.1	0.0	0.22	0.62	0.68	0.78	—	9338	1263	4	0	0	0	0	logfile
✔	7RXG	24730	2024-11-16	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	22.39	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.002	0.52	0.0	0.04	18.54	0.00	2.300	15.29	1.61	2.4	97.6	0.0	2.09	0.91	0.66	0.87	4.94	11380	1300	6	0	26	48	96	logfile
✔	7PiV	13454	2024-11-15	2021-08-23	2.86	2.87	—	3.2	0.013	1.71	1.0	0.10	13.14	0.00	2.234	3.79	0.86	5.7	94.1	0.2	-2.91	0.70	0.84	3.61	3.2	0.003	0.60	0.0	0.04	15.05	0.00	2.343	5.42	2.32	3.1	96.9	0.0	0.99	0.95	0.69	0.85	3.29	7814	976	13	0	2	115	0	logfile
✔	7PiU	13453	2024-11-14	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.84	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.002	0.53	0.0	0.04	16.28	0.00	2.524	4.63	1.46	1.9	98.1	0.0	2.02	0.94	0.69	0.88	4.28	7788	974	14	0	3	88	0	logfile
✔	7V8i	31802	2024-11-15	2021-08-23	3.6	3.75	—	3.7	0.005	0.87	0.0	0.05	15.81	0.01	2.007	11.55	1.36	3.9	95.8	0.3	-0.76	0.59	0.61	1.25	3.7	0.004	0.70	0.0	0.04	17.09	0.00	1.997	11.08	2.62	4.5	95.4	0.1	-0.39	1.14	0.67	0.72	1.09	9388	1261	6	0	4	0	0	logfile

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