Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBU	13303	2024-11-19	2021-08-02	3.3	2.68	—	3.4	0.005	0.82	0.0	0.05	16.55	0.01	2.364	1.82	0.00	1.1	98.9	0.0	0.22	0.60	0.76	2.90	3.3	0.003	0.60	0.0	0.04	20.45	0.00	2.454	3.53	2.59	1.3	98.7	0.0	0.97	1.84	0.61	0.79	1.58	19243	1063	12	68	0	0	9507	logfile
✔	7PBW	13307	2024-11-16	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile
✔	7RoZ	24610	2024-11-15	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.003	0.66	0.0	0.04	15.56	0.00	2.044	11.54	1.58	7.4	92.6	0.0	-0.99	1.17	0.85	0.82	2.67	7774	1064	2	0	1	0	0	logfile
✔	7PBD	13290	2024-11-18	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	16.57	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.5	0.003	0.61	0.0	0.04	14.17	0.00	2.461	5.01	1.39	3.2	96.8	0.1	0.91	0.41	0.78	0.85	3.13	14822	1784	15	0	25	0	0	logfile
✔	7FiY	31606	2024-11-15	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.34	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.60	0.0	0.04	13.71	0.00	2.488	6.85	2.85	2.2	97.8	0.0	1.20	1.70	0.70	0.81	2.01	9367	1152	7	0	6	0	0	logfile
✔	7FiJ	31599	2024-11-14	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.004	0.80	0.0	0.05	11.52	0.00	2.490	9.16	7.50	11.3	88.7	0.0	-1.47	0.69	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7FiL	31602	2024-11-14	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.004	0.79	0.0	0.04	18.83	0.00	2.504	9.99	4.38	6.9	92.9	0.2	1.39	1.55	0.71	0.76	0.80	3993	504	1	0	0	0	0	logfile
✔	7FiH	31597	2024-11-16	2021-07-31	3.2	2.63	—	3.5	0.005	0.76	1.0	0.05	13.98	0.00	1.962	8.33	0.17	3.3	96.6	0.1	-0.18	0.75	0.71	1.63	3.4	0.003	0.76	0.0	0.05	16.42	0.00	2.510	9.54	2.26	3.7	96.3	0.0	0.12	1.29	0.79	0.78	1.70	10853	1381	7	0	1	0	0	logfile
✔	7FiM	31603	2024-11-15	2021-07-31	3.4	3.76	—	3.8	0.004	0.83	0.0	0.05	13.92	0.01	2.226	7.19	0.41	2.3	97.7	0.0	-2.72	0.56	0.64	1.94	3.8	0.003	0.66	0.0	0.04	16.63	0.00	2.335	6.59	3.36	3.6	96.4	0.0	-0.79	0.80	0.71	0.82	1.52	9213	1157	6	0	0	0	0	logfile
✔	7Fii	31598	2024-11-15	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.60	0.0	0.04	9.55	0.00	2.607	4.77	0.00	3.2	96.8	0.0	0.73	0.72	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	7FiG	31596	2024-11-17	2021-07-31	3.9	4.18	—	4.1	0.007	1.11	0.0	0.06	13.42	0.01	2.011	3.48	0.00	5.3	94.7	0.0	-2.06	0.65	0.76	1.78	4.1	0.005	0.87	0.0	0.05	16.18	0.00	2.485	14.06	4.63	3.5	96.5	0.0	-0.38	2.50	0.68	0.79	1.29	12839	1632	10	0	5	0	0	logfile
✔	7RNX	24582	2024-11-14	2021-07-30	3.42	3.46	—	3.4	0.013	1.07	0.0	0.06	14.18	0.01	2.266	4.77	0.44	5.2	94.8	0.0	-4.11	0.69	0.84	1.92	3.5	0.005	0.62	0.0	0.04	15.45	0.00	2.496	7.59	3.83	3.6	96.4	0.0	1.05	0.36	0.68	0.85	1.95	6758	900	2	0	0	0	0	logfile
✔	7Ro0	24584	2024-11-14	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.65	0.0	0.04	16.06	0.00	2.446	5.58	3.40	4.1	95.9	0.0	-0.44	0.45	0.66	0.83	0.49	6742	898	2	0	0	0	0	logfile
✔	7FHL	31586	2024-11-17	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.57	0.0	0.04	14.85	0.00	2.342	7.24	1.85	2.1	97.9	0.0	2.48	0.47	0.69	0.82	1.85	11058	1326	6	0	28	0	0	logfile
✔	7PAF	13268	2024-11-14	2021-07-29	3.75	4.06	—	4.0	0.004	0.68	0.0	0.04	13.22	0.00	2.247	13.36	0.00	3.8	95.9	0.3	-2.72	0.67	0.76	2.36	4.0	0.004	0.75	0.0	0.04	16.04	0.00	2.483	13.77	3.16	5.4	94.6	0.0	0.06	0.71	0.67	0.76	1.47	6005	780	5	0	1	0	0	logfile
✔	7PAG	13269	2024-11-14	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.81	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.03	0.0	0.05	16.73	0.00	2.238	15.45	2.51	9.9	90.1	0.0	-2.88	1.30	0.33	0.67	—	4040	509	2	0	4	0	0	logfile
✔	7FHK	31585	2024-11-17	2021-07-29	3.3	3.56	—	3.6	0.004	0.60	0.0	0.04	12.53	0.00	2.210	8.33	0.00	2.1	97.9	0.0	1.22	0.66	0.83	2.28	3.6	0.003	0.58	0.0	0.04	14.82	0.00	2.426	6.46	1.09	2.6	97.4	0.0	2.37	0.46	0.65	0.83	2.32	11058	1326	6	0	28	0	0	logfile
✔	7RNN	24580	2024-11-14	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.96	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.63	0.0	0.04	15.51	0.00	2.631	4.10	1.09	2.2	97.8	0.0	0.49	0.97	0.49	0.87	4.04	4000	540	3	0	2	0	0	logfile
✔	7FH1	31584	2024-11-17	2021-07-29	3.34	3.67	—	3.6	0.009	1.20	9.0	0.07	21.25	0.02	2.200	19.78	3.15	14.2	85.8	0.0	-3.88	0.76	0.84	3.13	3.6	0.003	0.74	0.0	0.04	15.84	0.00	2.453	5.41	1.65	7.7	92.3	0.0	-1.01	1.98	0.74	0.87	2.70	13672	1748	10	0	22	0	0	logfile
✔	7FHo	31588	2024-11-18	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.002	0.55	0.0	0.04	15.50	0.00	2.292	5.97	0.61	2.6	97.4	0.0	2.91	1.50	0.67	0.85	2.88	10648	1294	4	0	6	0	0	logfile

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