Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FH1	31584	2024-11-17	2021-07-29	3.34	3.67	—	3.6	0.009	1.20	9.0	0.07	21.25	0.02	2.200	19.78	3.15	14.2	85.8	0.0	-3.88	0.76	0.84	3.13	3.6	0.003	0.74	0.0	0.04	15.84	0.00	2.453	5.41	1.65	7.7	92.3	0.0	-1.01	1.98	0.74	0.87	2.70	13672	1748	10	0	22	0	0	logfile
✔	7P9U	13266	2024-11-14	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.76	0.0	0.04	16.33	0.00	2.514	9.81	2.10	6.8	93.0	0.2	0.57	0.40	0.52	0.75	0.97	3943	503	2	0	0	0	0	logfile
✔	7P9V	13267	2024-11-14	2021-07-28	3.4	3.60	3.36	3.5	0.005	0.82	0.0	0.05	15.25	0.01	2.104	15.53	0.00	11.5	88.5	0.0	-2.67	0.62	0.78	1.97	3.5	0.004	0.74	0.0	0.04	15.89	0.00	2.521	10.83	1.67	7.8	92.2	0.0	-0.92	0.97	0.63	0.79	1.66	7286	919	6	0	8	0	0	logfile
✔	7RMH	24570	2024-11-15	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.003	0.59	0.0	0.04	15.22	0.00	2.376	4.08	1.93	3.3	96.6	0.1	0.58	0.54	0.68	0.81	2.11	7434	986	7	0	1	0	0	logfile
✔	7RMi	24572	2024-11-15	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.60	0.0	0.04	14.43	0.00	2.413	6.65	1.86	2.8	97.2	0.0	1.16	0.51	0.66	0.77	2.24	7205	960	7	0	1	0	0	logfile
✔	7RMG	24569	2024-11-15	2021-07-27	3.0	3.53	2.91	3.4	0.004	0.76	0.0	0.05	12.65	0.01	2.290	3.72	0.14	2.7	97.3	0.0	-0.92	0.75	0.80	3.48	3.4	0.003	0.60	0.0	0.04	14.96	0.00	2.397	4.49	1.92	2.1	97.9	0.0	1.34	0.94	0.74	0.86	3.22	7316	968	7	0	1	0	0	logfile
✔	7FGF	31579	2024-11-16	2021-07-26	2.8	2.93	—	3.0	0.006	0.77	0.0	0.05	14.36	0.01	2.022	8.04	0.00	6.9	93.1	0.0	-1.60	0.68	0.86	4.69	3.0	0.003	0.61	0.0	0.04	17.11	0.00	2.543	7.67	2.30	6.2	93.8	0.0	-0.98	0.39	0.70	0.87	4.04	10143	1296	3	0	0	0	0	logfile
✔	7FG3	31577	2024-11-15	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.005	1.11	0.0	0.05	16.69	0.01	2.298	18.78	2.69	13.2	86.3	0.5	-3.44	0.77	0.22	0.43	0.35	9054	1166	2	0	0	0	0	logfile
✔	7FG2	31574	2024-11-15	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.79	0.0	0.05	14.65	0.01	2.498	14.04	0.00	14.1	85.6	0.3	-2.78	0.74	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7FFN	31569	2024-11-15	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.69	0.0	0.05	14.49	0.01	2.282	6.72	1.91	5.8	94.2	0.0	-0.44	2.01	0.41	0.87	3.25	8589	1112	6	0	1	0	0	logfile
✔	7P8W	13256	2024-11-18	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.63	0.0	0.04	15.52	0.00	2.571	3.35	0.40	2.8	97.2	0.0	0.89	1.12	0.85	0.91	6.29	17668	2008	12	0	8	1110	0	logfile
✔	7RL4	24514	2024-11-14	2021-07-23	2.86	2.50	—	3.1	0.015	1.16	0.0	0.07	16.04	0.01	2.535	12.04	0.00	12.5	87.5	0.0	-4.62	0.39	0.82	4.55	3.0	0.010	0.95	0.0	0.05	16.84	0.01	2.575	14.09	7.00	7.0	93.0	0.0	-4.66	0.67	0.39	0.84	4.64	4620	680	20	0	0	0	0	logfile
✔	7P92	13258	2024-11-16	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.3	0.003	0.56	0.0	0.04	17.04	0.00	2.516	5.62	1.93	3.0	97.0	0.0	0.56	1.69	0.53	0.82	3.44	10436	1322	9	0	12	157	0	logfile
✔	7P8V	13255	2024-11-14	2021-07-23	3.6	3.94	—	3.8	0.013	1.81	1.0	0.10	20.31	0.01	2.287	5.15	0.36	3.3	96.7	0.0	-0.42	0.83	0.85	2.78	3.8	0.005	0.63	0.0	0.04	20.76	0.00	1.783	8.84	3.83	4.6	95.4	0.0	-0.55	1.00	0.81	0.84	2.42	5988	662	6	35	4	0	0	logfile
✔	7FFo	31570	2024-11-15	2021-07-23	3.5	3.58	—	3.6	0.007	0.94	0.0	0.06	9.50	0.01	1.293	5.69	0.33	6.6	93.3	0.1	-2.95	0.44	0.78	3.07	3.6	0.004	0.70	0.0	0.05	14.43	0.01	2.540	7.46	2.11	4.9	95.1	0.0	-0.49	1.60	0.47	0.84	2.81	8255	1067	4	0	0	0	0	logfile
✔	7RKX	24506	2024-11-15	2021-07-22	3.1	3.43	3.11	3.4	0.005	0.71	0.0	0.05	12.43	0.01	2.137	4.07	0.00	3.9	96.1	0.0	-0.60	0.72	0.88	4.25	3.4	0.004	0.63	0.0	0.04	14.87	0.00	2.478	3.35	2.73	3.3	96.7	0.1	0.64	0.94	0.67	0.88	3.15	8559	1126	5	0	0	0	0	logfile
✔	7RKM	24500	2024-11-15	2021-07-22	3.5	3.62	—	3.5	0.005	0.97	0.0	0.06	12.32	0.00	2.181	7.47	0.00	3.7	96.3	0.0	-1.13	0.74	0.83	3.32	3.5	0.003	0.65	0.0	0.04	14.33	0.00	2.380	9.91	1.35	4.1	95.9	0.0	-0.30	0.37	0.74	0.83	2.89	9491	1201	7	0	1	0	0	logfile
✔	7RKN	24501	2024-11-15	2021-07-22	3.6	3.80	—	3.7	0.004	0.97	0.0	0.06	12.67	0.01	2.206	7.90	0.00	4.7	95.3	0.0	-2.17	0.74	0.81	2.81	3.6	0.003	0.64	0.0	0.04	14.98	0.00	2.556	9.24	2.55	3.9	96.1	0.0	-1.05	0.45	0.74	0.83	2.14	9393	1201	6	0	0	0	0	logfile
✔	7FEQ	31560	2024-11-19	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.003	0.69	0.0	0.05	16.35	0.00	2.372	2.97	1.26	9.7	90.1	0.2	-3.37	1.02	0.67	0.87	2.74	19236	2520	14	0	0	0	0	logfile
✔	7RHZ	24472	2024-11-17	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.17	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.005	0.69	0.0	0.04	21.45	0.01	2.227	14.83	0.00	6.1	93.9	0.0	-0.41	2.21	0.88	0.79	—	12550	615	4	88	0	0	5875	logfile

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