Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ri4	24473	2024-11-16	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.003	0.75	0.0	0.05	17.89	0.00	2.431	8.09	4.86	15.4	84.5	0.1	-3.13	0.51	0.70	0.79	1.57	12248	1578	6	0	0	0	0	logfile
✔	7RHY	24471	2024-11-14	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.98	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.0	0.003	0.61	0.0	0.04	23.07	0.00	2.462	4.73	2.80	4.0	96.0	0.0	1.84	0.93	0.74	0.77	1.98	6350	301	2	49	0	0	2957	logfile
✔	7RHZ	24472	2024-11-17	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.17	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.005	0.69	0.0	0.04	21.45	0.01	2.227	14.83	0.00	6.1	93.9	0.0	-0.41	2.21	0.88	0.79	—	12550	615	4	88	0	0	5875	logfile
✔	7FED	31553	2024-11-18	2021-07-19	3.55	3.83	—	3.8	0.006	0.81	0.0	0.06	13.87	0.00	2.394	10.94	0.63	3.2	96.8	0.0	-1.53	0.75	0.81	2.47	3.8	0.005	0.67	1.0	0.04	15.32	0.00	2.184	7.93	0.50	4.3	95.7	0.0	-0.18	0.93	0.75	0.82	1.88	48150	6048	18	0	0	0	0	logfile
✔	7RHQ	24466	2024-11-16	2021-07-18	3.53	3.57	—	3.5	0.009	1.06	0.0	0.06	10.92	0.01	2.153	3.32	0.09	5.7	94.3	0.1	-5.45	0.74	0.85	3.27	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.113	8.97	2.98	4.2	95.7	0.1	-0.15	1.27	0.74	0.84	2.50	10499	1305	8	0	15	0	0	logfile
✔	7RHG	24460	2024-11-17	2021-07-17	2.88	2.68	—	2.7	0.003	0.59	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.7	0.003	0.53	0.0	0.04	17.25	0.00	2.601	7.12	0.99	1.7	98.3	0.0	2.45	0.34	0.69	0.89	3.66	14753	1790	8	0	4	0	0	logfile
✔	7RHL	24465	2024-11-18	2021-07-17	3.03	2.43	—	2.7	0.003	0.56	0.0	0.04	13.97	0.00	2.217	5.43	0.00	1.5	98.5	0.0	1.66	0.63	0.84	3.54	2.7	0.003	0.50	0.0	0.04	15.05	0.00	2.587	7.89	0.74	1.3	98.7	0.0	2.60	0.36	0.64	0.86	3.54	15371	1932	4	0	0	0	0	logfile
✔	7RH9	24458	2024-11-17	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.004	0.55	0.0	0.04	15.64	0.00	2.460	8.05	1.12	1.6	98.4	0.0	2.28	0.91	0.64	0.86	4.01	14680	1792	4	0	0	0	0	logfile
✔	7FD9	31537	2024-11-16	2021-07-16	4.0	4.34	3.85	3.8	0.007	1.28	0.0	0.13	17.54	0.00	2.266	9.05	0.00	6.4	93.6	0.0	-0.84	0.71	0.80	—	3.8	0.002	0.62	0.0	0.04	14.77	0.00	2.594	9.19	1.50	4.0	96.0	0.0	0.00	1.36	0.72	0.81	—	11476	1534	4	0	4	0	0	logfile
✔	7FDi	31544	2024-11-14	2021-07-16	3.12	3.24	—	3.2	0.005	0.64	0.0	0.05	15.54	0.00	2.109	15.52	0.15	3.7	96.3	0.0	-0.19	0.61	0.78	3.28	3.2	0.003	0.62	0.0	0.04	15.24	0.00	2.503	8.84	0.74	2.7	97.3	0.0	1.00	1.11	0.61	0.79	2.47	6403	788	4	0	5	0	0	logfile
✔	7FDH	31543	2024-11-14	2021-07-16	3.72	3.93	—	3.8	0.004	0.73	0.0	0.05	14.49	0.00	2.145	13.20	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.004	0.74	0.0	0.04	15.93	0.00	2.442	10.44	1.87	3.2	96.8	0.0	0.72	0.63	0.71	0.80	1.95	6488	791	4	0	5	0	0	logfile
✔	7FDK	31546	2024-11-14	2021-07-16	3.69	3.82	—	3.8	0.008	0.88	0.0	0.05	15.52	0.01	2.080	18.21	0.29	13.2	86.7	0.1	-4.54	0.61	0.79	1.60	3.8	0.003	0.73	0.0	0.04	16.31	0.01	2.537	9.62	1.89	7.1	92.9	0.0	-0.83	0.66	0.60	0.76	1.38	6449	791	4	0	3	0	0	logfile
✔	7FDG	31542	2024-11-14	2021-07-16	3.69	4.43	—	4.3	0.007	0.85	0.0	0.05	16.00	0.01	2.061	23.62	0.29	7.4	92.6	0.0	-3.38	0.59	0.78	1.13	4.3	0.003	0.82	0.0	0.05	17.51	0.00	2.306	14.31	1.75	4.1	95.9	0.0	-0.48	0.78	0.57	0.75	1.55	6459	791	4	0	5	0	0	logfile
✔	7P6A	13223	2024-11-14	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	7P6D	13226	2024-11-14	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.005	0.71	0.0	0.05	13.38	0.00	2.516	2.70	2.02	9.0	91.0	0.0	-3.11	2.42	0.47	0.82	4.30	4340	575	5	0	0	0	0	logfile
✔	7P6E	13227	2024-11-15	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.004	0.70	0.0	0.05	12.81	0.00	2.555	7.13	2.53	4.1	95.9	0.0	-4.14	2.66	0.50	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	7FCV	31532	2024-11-18	2021-07-15	2.9	3.53	—	3.2	0.008	1.04	0.0	0.06	12.12	0.01	2.271	4.38	0.00	8.4	91.6	0.0	-3.29	0.62	0.81	3.28	3.2	0.003	0.68	0.0	0.04	13.96	0.00	2.541	6.84	1.11	6.6	93.4	0.0	0.61	1.67	0.62	0.82	2.20	15143	1848	8	0	7	0	0	logfile
✔	7P6C	13225	2024-11-15	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.003	0.61	0.0	0.05	17.13	0.00	2.492	3.49	1.40	3.4	96.6	0.0	-2.65	0.91	0.44	0.89	7.22	8120	1080	10	0	0	0	0	logfile
✔	7P6B	13224	2024-11-14	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.69	0.0	0.05	16.94	0.00	2.563	5.89	1.29	4.7	95.3	0.0	-2.34	0.54	0.49	0.88	6.57	4060	540	5	0	0	0	0	logfile
✔	7RGL	24451	2024-11-19	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	16.03	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.5	0.003	0.55	0.0	0.04	15.83	0.00	2.460	2.32	0.83	4.0	96.0	0.0	0.88	0.96	0.66	0.89	5.41	50936	3328	16	0	16	0	25408	logfile

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