Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P6A	13223	2024-11-14	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	7P65	13218	2024-11-14	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.01	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.006	0.65	0.0	0.05	15.70	0.00	2.618	4.73	1.47	3.3	96.7	0.0	-2.89	0.48	0.49	0.88	5.16	4145	550	5	0	0	0	0	logfile
✔	7P6E	13227	2024-11-15	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.004	0.70	0.0	0.05	12.81	0.00	2.555	7.13	2.53	4.1	95.9	0.0	-4.14	2.66	0.50	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	7P67	13220	2024-11-15	2021-07-15	3.1	3.08	2.94	3.2	0.007	1.06	0.0	0.09	11.98	0.00	2.338	3.61	0.00	4.7	95.3	0.0	-3.19	0.49	0.83	4.12	3.1	0.005	0.73	0.0	0.05	15.09	0.00	2.482	6.49	2.37	5.3	94.7	0.0	-3.31	0.94	0.44	0.84	4.66	8120	1080	10	0	0	0	0	logfile
✔	7P5C	13198	2024-11-14	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.60	0.0	0.04	14.52	0.00	2.220	7.00	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.003	0.54	0.0	0.04	15.75	0.00	2.520	5.39	1.98	1.8	98.2	0.0	4.15	0.33	0.52	0.80	1.48	6222	784	6	0	8	0	0	logfile
✔	7P54	13194	2024-11-14	2021-07-14	3.3	3.29	3.21	3.5	0.004	0.55	0.0	0.04	13.94	0.00	2.206	6.98	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.51	0.0	0.04	15.73	0.00	2.517	6.34	2.58	2.2	97.8	0.0	4.38	1.36	0.54	0.78	0.82	6248	794	8	0	12	0	0	logfile
✔	7P5J	13200	2024-11-14	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	17.48	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.80	0.0	0.04	17.58	0.00	2.391	9.60	3.02	1.8	98.2	0.0	3.20	0.47	0.53	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7P5M	13201	2024-11-14	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	16.50	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.65	0.0	0.04	16.00	0.00	2.506	7.83	2.14	1.4	98.6	0.0	3.83	1.37	0.53	0.77	1.01	6204	788	8	0	12	0	0	logfile
✔	7RG9	24445	2024-11-15	2021-07-14	3.2	2.74	—	2.7	0.011	0.87	0.0	0.05	14.59	0.00	1.916	16.10	0.76	8.5	91.5	0.0	-2.49	0.57	0.72	2.97	3.0	0.003	0.67	0.0	0.04	16.62	0.00	2.348	9.52	2.77	3.8	96.2	0.0	-0.75	0.54	0.56	0.72	2.22	9769	1246	6	0	0	0	0	logfile
✔	7FCi	31526	2024-11-14	2021-07-14	3.3	3.20	3.10	3.4	0.003	0.60	0.0	0.04	16.43	0.01	2.250	7.53	4.55	3.6	96.4	0.0	0.59	0.52	0.76	2.38	3.4	0.003	0.60	0.0	0.04	16.44	0.01	2.577	6.47	3.45	3.2	96.8	0.0	0.74	0.24	0.67	0.86	2.28	5613	734	3	0	0	0	0	logfile
✔	7RFP	24444	2024-11-14	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.84	0.00	2.423	6.58	0.00	17.2	82.3	0.5	-3.77	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile
✔	7RER	24437	2024-11-18	2021-07-13	2.6	2.46	—	2.4	0.012	1.72	13.0	0.10	14.33	0.01	2.398	1.60	1.09	4.0	95.7	0.3	-0.64	0.67	0.83	6.34	2.4	0.004	0.63	0.0	0.04	15.72	0.00	2.392	3.56	0.60	3.4	96.4	0.1	0.39	0.46	0.68	0.85	5.32	47737	3112	16	0	16	0	23697	logfile
✔	7RE0	24429	2024-11-20	2021-07-12	3.5	4.17	—	3.8	0.009	0.88	1.0	0.05	16.13	0.01	1.129	13.09	9.24	6.7	93.1	0.2	-1.80	0.83	0.74	2.06	3.8	0.003	0.66	0.0	0.04	16.11	0.00	1.937	9.40	2.00	4.4	95.6	0.0	-0.05	2.00	0.87	0.83	1.41	21577	2553	11	71	16	0	0	logfile
✔	7RE2	24431	2024-11-18	2021-07-12	3.17	3.46	—	3.4	0.007	0.65	0.0	0.14	16.68	0.00	1.932	8.83	2.42	5.0	95.0	0.0	-0.57	0.77	0.83	3.11	3.4	0.003	0.56	0.0	0.04	16.12	0.00	2.010	6.84	1.95	4.0	96.0	0.0	0.25	0.35	0.77	0.85	2.48	17096	1963	9	71	13	0	0	logfile
✔	7P4i	13193	2024-11-15	2021-07-11	4.2	5.62	—	4.1	0.003	0.76	0.0	0.04	13.10	0.00	2.168	11.83	0.00	5.7	94.3	0.0	-0.54	0.61	0.84	—	4.2	0.003	0.73	0.0	0.04	13.59	0.00	2.488	10.40	0.00	5.5	94.5	0.0	0.57	0.93	0.61	0.86	—	9510	1284	3	0	0	0	0	logfile
✔	7FBi	31515	2024-11-15	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.004	0.82	0.0	0.05	16.89	0.00	2.419	11.45	5.47	14.2	85.8	0.0	-3.39	0.56	0.40	0.79	1.78	7777	1005	5	0	0	0	0	logfile
✔	7RD7	24414	2024-11-14	2021-07-09	3.08	3.26	—	3.3	0.005	1.33	0.0	0.05	13.97	0.01	1.902	8.98	0.00	7.1	92.9	0.0	-1.78	0.59	0.74	2.28	3.3	0.003	0.90	0.0	0.04	15.90	0.00	2.040	9.86	1.69	6.6	93.4	0.0	-0.95	0.32	0.60	0.76	1.70	7400	929	2	0	2	0	0	logfile
✔	7RD6	24413	2024-11-14	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.003	0.67	0.0	0.04	16.33	0.00	2.405	10.20	1.93	4.5	95.5	0.0	-1.10	0.91	0.57	0.73	2.06	7396	929	2	0	2	0	0	logfile
✔	7P3Q	13182	2024-11-15	2021-07-08	3.12	3.23	3.11	3.2	0.009	1.34	0.0	0.07	18.91	0.01	2.218	11.33	0.40	4.5	95.5	0.0	0.44	0.68	0.81	1.87	3.2	0.003	0.60	0.0	0.04	16.68	0.00	2.556	12.33	0.70	4.4	95.6	0.0	1.03	0.54	0.69	0.86	1.66	9632	1176	16	0	24	0	0	logfile
✔	7FB4	31514	2024-11-20	2021-07-08	3.4	4.08	—	3.9	0.005	0.71	0.0	0.05	14.05	0.00	2.164	12.36	0.08	9.3	90.7	0.0	-4.07	0.79	0.82	2.10	3.9	0.003	0.62	0.0	0.04	15.45	0.00	2.544	7.62	1.46	6.6	93.4	0.0	-1.30	1.45	0.77	0.81	1.70	21411	2746	3	0	0	0	0	logfile

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