Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P3Q	13182	2024-11-15	2021-07-08	3.12	3.23	3.11	3.2	0.009	1.34	0.0	0.07	18.91	0.01	2.218	11.33	0.40	4.5	95.5	0.0	0.44	0.68	0.81	1.87	3.2	0.003	0.60	0.0	0.04	16.68	0.00	2.556	12.33	0.70	4.4	95.6	0.0	1.03	0.54	0.69	0.86	1.66	9632	1176	16	0	24	0	0	logfile
✔	7FAP	31504	2024-11-16	2021-07-07	3.4	2.53	—	3.4	0.011	1.05	1.0	0.07	20.81	0.00	2.195	10.64	0.80	5.3	94.6	0.1	-1.03	0.71	0.69	1.56	3.4	0.003	0.63	0.0	0.04	18.43	0.00	2.335	8.39	2.14	3.3	96.7	0.0	0.15	1.19	0.74	0.74	1.55	10445	1236	2	0	12	0	0	logfile
✔	7FAS	31505	2024-11-16	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.55	0.0	0.04	17.48	0.00	2.528	7.35	2.14	4.8	95.2	0.0	0.89	1.13	0.73	0.75	0.83	10173	1229	1	0	0	0	0	logfile
✔	7P3F	13179	2024-11-14	2021-07-07	3.31	3.46	3.33	3.4	0.009	1.32	6.0	0.08	25.95	0.01	2.242	7.35	1.59	4.3	95.7	0.0	-1.22	0.74	0.80	2.05	3.4	0.003	0.58	0.0	0.03	25.16	0.00	2.509	8.06	1.79	4.1	95.9	0.0	-0.25	0.57	0.74	0.83	2.39	6878	588	10	100	12	0	0	logfile
✔	7P37	13178	2024-11-17	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	16.90	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.2	0.002	0.51	0.0	0.04	17.43	0.00	2.490	7.35	1.39	2.0	98.0	0.0	1.76	0.93	0.69	0.80	2.75	14496	1764	24	0	36	0	0	logfile
✔	7P2Q	13172	2024-11-14	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	11.11	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.81	0.0	0.04	12.45	0.00	2.297	11.06	0.00	5.2	94.8	0.0	-0.46	1.57	0.80	0.75	—	4780	587	5	0	5	0	0	logfile
✔	7P2P	13171	2024-11-14	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	13.15	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.85	0.0	0.05	12.82	0.01	2.444	12.50	0.00	7.4	92.6	0.0	-1.98	1.13	0.78	0.73	—	4783	587	5	0	5	0	0	logfile
✔	7RAZ	24390	2024-11-16	2021-07-05	3.4	4.46	3.18	3.9	0.004	0.87	0.0	0.04	13.68	0.00	2.201	11.69	0.00	2.3	97.7	0.0	1.13	0.79	0.85	2.19	3.9	0.005	0.74	0.0	0.04	14.42	0.00	2.475	10.79	1.90	2.4	97.6	0.0	0.82	0.40	0.79	0.87	2.23	10472	1330	14	0	7	0	0	logfile
✔	7RB8	24399	2024-11-17	2021-07-05	3.63	3.84	3.65	3.8	0.004	0.68	0.0	0.05	14.22	0.00	1.921	8.73	0.07	5.4	94.6	0.0	-0.17	0.59	0.86	2.65	3.8	0.003	0.64	0.0	0.04	15.65	0.00	2.199	6.68	0.98	4.4	95.6	0.0	0.58	0.47	0.60	0.87	2.08	14226	1786	8	0	8	0	0	logfile
✔	7F9Y	31500	2024-11-16	2021-07-05	2.9	2.26	—	2.2	0.003	0.55	0.0	0.04	12.55	0.00	1.951	5.33	0.00	1.2	98.8	0.0	1.79	0.73	0.74	2.95	2.1	0.003	0.55	0.0	0.04	15.73	0.00	2.566	4.79	2.43	1.7	98.3	0.0	1.42	0.48	0.76	0.79	3.05	8354	1051	8	0	3	0	0	logfile
✔	7F9Z	31501	2024-11-16	2021-07-05	3.2	2.27	—	2.1	0.005	0.56	3.0	0.04	13.18	0.00	1.866	7.66	0.00	1.9	98.1	0.0	1.51	0.69	0.68	1.75	2.1	0.003	0.65	0.0	0.05	15.84	0.00	2.474	10.43	2.58	3.4	96.6	0.0	0.68	1.55	0.73	0.74	2.17	9982	1264	7	0	7	0	0	logfile
✔	7F92	31495	2024-11-20	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.57	0.0	0.04	15.58	0.00	2.636	1.62	1.90	1.6	98.4	0.0	1.04	0.33	0.73	0.90	2.61	21240	2352	36	0	132	264	0	logfile
✔	7F93	31496	2024-11-20	2021-07-03	3.6	3.95	—	4.0	0.007	1.26	0.0	0.05	16.99	0.01	2.293	3.35	4.00	2.8	97.2	0.0	-5.48	0.56	0.84	2.93	4.1	0.002	0.61	0.0	0.04	15.51	0.00	2.481	6.65	2.10	2.3	97.7	0.0	1.35	0.81	0.56	0.83	2.94	20808	2352	24	0	120	0	0	logfile
✔	7F94	31497	2024-11-19	2021-07-03	3.6	3.78	—	3.8	0.006	0.92	0.0	0.05	14.36	0.01	2.026	3.62	0.57	4.5	95.5	0.0	-3.30	0.66	0.87	3.06	3.7	0.004	0.72	0.0	0.04	16.12	0.00	2.449	6.43	2.52	4.3	95.7	0.0	2.01	0.61	0.67	0.86	2.71	19128	2352	12	0	0	0	0	logfile
✔	7RAM	24369	2024-11-16	2021-07-02	3.43	4.07	3.55	4.0	0.002	0.57	0.0	0.04	14.51	0.00	2.154	7.54	0.00	4.4	95.6	0.0	-0.56	0.72	0.76	2.24	4.0	0.003	0.62	0.0	0.04	15.97	0.00	2.462	6.66	1.11	4.8	95.2	0.0	-0.07	0.34	0.71	0.76	1.60	12006	1497	4	0	0	0	0	logfile
✔	7RAV	24387	2024-11-14	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.92	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	2.2	0.004	0.80	0.0	0.05	17.73	0.00	2.400	12.55	2.93	15.4	84.4	0.1	-2.66	0.44	0.73	0.73	2.09	6215	773	2	0	1	0	0	logfile
✔	7RAN	24378	2024-11-15	2021-07-02	3.45	3.40	—	3.5	0.003	0.62	0.0	0.05	12.45	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.57	0.0	0.04	14.76	0.00	2.498	3.47	1.79	2.6	97.4	0.0	0.93	0.37	0.75	0.83	2.38	8523	1120	6	0	1	0	0	logfile
✔	7F8W	31494	2024-11-15	2021-07-02	3.1	2.94	—	3.2	0.005	1.04	0.0	0.06	14.09	0.01	2.273	8.70	0.00	4.6	95.4	0.0	-1.99	0.54	0.58	1.20	3.2	0.004	0.76	0.0	0.04	16.27	0.00	2.513	17.16	3.37	4.6	95.4	0.0	-0.95	0.61	0.58	0.65	0.59	8486	1087	6	0	0	0	0	logfile
✔	7F8N	31490	2024-11-19	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	18.97	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.003	0.59	0.0	0.04	16.40	0.00	2.459	11.47	2.23	3.7	96.3	0.0	-0.25	0.46	0.60	0.84	2.12	18522	2163	14	0	49	0	0	logfile
✔	7RAU	24386	2024-11-19	2021-07-02	3.99	4.71	—	4.5	0.009	1.26	0.0	0.05	12.74	0.01	2.299	4.39	1.11	6.3	93.5	0.2	-4.28	0.63	0.79	0.68	4.5	0.003	0.85	0.0	0.05	15.23	0.00	2.462	11.48	2.45	6.4	93.6	0.0	0.23	1.79	0.63	0.79	0.65	20000	2440	8	0	8	0	0	logfile

• ← previous
• Page 292 of 424
• next →